XLOC_006839 (si:dkey-188i13.11)


Basic Information

Item Value
gene id XLOC_006839
gene name si:dkey-188i13.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37650673 ~ 37656690 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013157
GCATTTGACCTGCTTGTCTCCTGTCTTGCAAGAAGCCAGATTGATTGTGTTCTCCATCGGATGGACTCTGCCTAACACCTGCTCCTGTCATTTCATGATCGGCATCTGCAAAACATGGTCAATTGAGTTAACCAGAATCTTTATTcggaaataaaacacaaagtgaTATCAAAAGCAATCACTATACCAGCTGAACTTCCAAGCTTGAAATCTTCATTTTCTAAAAGGTTTTGTCCGAGCAGTAAGGAATCATCCAACTGGTCGCTGGGAACCAGATgattgaatgaaccaccaactatatcCATGAATACCTGCACTGTGTGGTTCGCTCTgcaggggtaaaaaaaaaagaaaaaaaagCTTTATCCACCAAAACCATTATTGGAGCTACAGCTGGAGCTGTTGGTGCCGTTGCATTGACCCCGCTGGCCCTCAGTATGGCCGGGTTCACCGCTGCTGGCATCACAGCAGGTTCTACGGCAGCTGGTATGATGTCCACAGCAGCTGTAGCTAATGGAGGTGGTGTGGCTGCTGGAAGTGTAGTCGCTCTCCTCCAGTCAGCAGGTGCTGCTGGTTTATCCTCCGCAGCAACAGCTGGTGTGGCATCTGTAGGTGGCGCTGCAGGAGGGCTTTTAGGTGGAGCTGTTAATTGGTGGAGAGGAAAATGAATACATGTACTCATTTAGGAGCAgaagtcttttgtgttcaatagaaacaATAATAAACTCTTAAAGTTTAAAAA
>TCONS_00013158
GTTCTTCCATAGTTTATAGTACGCTAAAACAGTATGGCAGCCGAGTAGTCTGTCGGCTGTAAAGGAGTATTTGCCAATATCAGCTAACGTTAGAGTGTCAAGAACGGTTTACATTTCATTTCGCACGTTTCTTCGACAGCAAGACGATGCCGACGCTGCCAACTTTATCCACCAAAACCATTATTGGAGCTACAGCTGGAGCTGTTGGTGCCGTTGCATTGACCCCGCTGGCCCTCAGTATGGCCGGGTTCACCGCTGCTGGCATCACAGCAGGTTCTACGGCAGCTGGTATGATGTCCACAGCAGCTGTAGCTAATGGAGGTGGTGTGGCTGCTGGAAGTGTAGTCGCTCTCCTCCAGTCAGCAGGTGCTGCTGGTTTATCCTCCGCAGCAACAGCTGGTGTGGCATCTGTAGGTGGCGCTGCAGGAGGGCTTTTAGGTGGAGCTGTTAATTGGTGGAGAGGAAAATGAATACATGTACTCATTTAGGAGCAgaagtcttttgtgttcaatagaaacaATAATAAACTCTTAAAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092895

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013157 False 742 processed_transcript 0.46 5 37650673 37656690
TCONS_00013158 True 537 mRNA 0.49 4 37650680 37653840

Neighbor

gene id symbol gene type direction distance location
XLOC_006838 si:dkey-188i13.10 coding downstream 1078 37645572 ~ 37649595 (-)
XLOC_006837 si:dkey-188i13.9 coding downstream 7772 37638758 ~ 37642901 (-)
XLOC_006836 NA coding downstream 14075 37632626 ~ 37636598 (-)
XLOC_006835 ifi46 coding downstream 19581 37623276 ~ 37631092 (-)
XLOC_006834 zgc:152791 coding downstream 30383 37617518 ~ 37620290 (-)
XLOC_006840 eys coding upstream 335468 37992158 ~ 38039871 (-)
XLOC_006841 CT027676.1 coding upstream 427387 38084077 ~ 38088627 (-)
XLOC_006842 NA coding upstream 533831 38190521 ~ 38195214 (-)
XLOC_006843 NA coding upstream 956535 38613225 ~ 38619719 (-)
XLOC_006844 lmbrd1 coding upstream 964827 38621517 ~ 38792061 (-)
XLOC_006471 BX537274.2 misc downstream 27385768 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36824448 825904 ~ 826225 (-)
XLOC_006829 NA non-coding downstream 114888 37528161 ~ 37535785 (-)
XLOC_006819 AL845493.1 non-coding downstream 471957 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 540137 37110212 ~ 37110536 (-)
XLOC_006815 NA non-coding downstream 638437 37009812 ~ 37012236 (-)
XLOC_006846 BX323574.1 non-coding upstream 1196447 38853137 ~ 38853252 (-)
XLOC_006848 BX324188.2 non-coding upstream 1585865 39242555 ~ 39242672 (-)
XLOC_006850 NA non-coding upstream 1842902 39499592 ~ 39504493 (-)

Expression


Co-expression Network