cacng2a (cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911)


Basic Information

Item Value
gene id cacng2a
gene name cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10711327 ~ 10769397 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225671.1
cccttcctctTTCCGAGCCACAGCACGCCTGCCTACATCCCTCTCCCAAATCTTCACTAGCACACAAGCAAAGGGGACCGAAGCAGACCCGTATCCTCCTTTCCCAGCACACCACGTTCCTCATTCTCAggtctttttgtcttttacatGGCGCAAGGGCTCTGCAAGCGGGACGGTTCTGGGTGCGAGAAAGCCAGCGCGGATTTGGATAAGCGAGCATCAGCGGCGGGTGTAGACCACAGCAGTTCCGGCGCCTCCGCCTTCTCGGTCTCCTCTAGCCGGCTCTATGACTAGTAATGGTCGGCTCGTTCTGCTGGATGCTCCCTGCTCTAACCGGATCTTCGACGGCACCATATTCAACAGCAGATTGCCATTTTCGGAAGAGACCTTCAAAGAGCTAGGAGATACATATGGAAACTGGGGATCAGAATTTTAGGAAAAAGGATATATAGtagtgctttattttattattccatTTTGCTCATTTATGTTTCGTTCTCGATGAATTCTGTCATTCCATCGTTGACTTGATTTGTCAAATTGACGCGAGAGCGGCGGCAGCAGATTTTGATTCACCTggacattcttttttttgttggttttgaacTGGACTATCCtggccatccatccatctatcctgtatttttttctgctccTGCACTCGAATAGAGCTTTCCCTGTCCtttctgggtttttttcttcttcttcctctctgcGTCTTTCCCTCTTGATTAGAACAGACTAGGATATGCTTAGCCGTGTTAAGAGAGGACGGCGTGTTTGTTAAGCAGCTACGTAGGTCAACAGTTGTTGTAACACATCGAATTGTTTAGATATATTCCGATCCGAAGCAAAGCCTTCCACTGCTCCATCAACGCCAGTCCGAATTCCACATTCTTCCTAAACCAGTATTTATCCTCGATTCCTAACGCGTCAAATCTACGCGCCTAAATAGTCATAATTAAAACCGAGCATTGTTCAGCATCGGCTTAATTGCTGTGGCGTTTGAATGACATGCTCGGGCCATTATTAAAGGCCTCGGCAATTAATTATTATCTTTGATTAGTGGCTTTGCAGCGCGAATGTTCGTGTAAGTTTAAGCTGTAGCACTAGCTGCTGCATATCTCACCTCGTTTAGAGACAATAAGACAAGGGCAAACGATTTAGGACGGCGATACTGCTCTTTGTTGGAACAGTGCGGAAAGCGTACCGTTCCgctccaaaaacaaaacgaagAAGCCAGAAAGGCTCACCTATTTCTCCCTTAATCGGTTCTCACCCAAACGCAACCATAAGGTTCCTACCGCATCCTCCCCCTTCCCCCTCCTTTCGCTCAAATATAtcccatttttttaatttggtttggtcccgtaaattttcaaatatttatttcctatACATCAAGAGGAAAGGGGGTCCCCCTTTCATGGAATGCGGAAACATGGGTGTGTTTGACCGCGGAGTTCAGATGTTATTGACCACGGTGGGTGCGTTCGCCGCCTTCAGTCTCATGACCATCGCGGTGGGCACGGACTACTGGCTGTACTCGCGCGGCGTGTGTAAGATCAAGAGCAACAACGAGAACGAGACCAGCAAGAAGAACGAAGAGGTGATGACCCACTCGGGACTGTGGAGGACATGTTGCTTGGAAGGAAACTTCAAAGGATTGTGTAAGCAGATAGATCACTTTCCAGAAGACACAGATTATGAAGCAGATGCCTCGGAGTACTTCTTACGAGCCGTACGAGCGTCTAGTATCTTCCCCATCCTCAGCGTCATCCTGCTCTTCATGGGTGGCCTGTGTATAGCTGCCAGCGAGTTCTACAAGTCCCGTCACAATATCATCCTCAGTGCAGGAATCCTCTTTGTGTCTGCAGGCCTCAGTAACATCATTGGCATGATCGTGTACATATCAGCCAATGCGGGGGATCCCTCAAAGAGCGACTCCAAGAAGAACAGCTACTCATATGGCTGGAGTTTCTACTTTGGTGCTTTGTCCTTTATCATGGCTGAAATGGTGGGCGTGCTGGCCGTGCACATGTTCATCGACCGGCACCGGGAGCTGCGGGCGGGCGCGCGGGCCGCAGATTACCTGCAGGGCTCGGCTATCACGCGCATCCCCAGCTACCGGTACCGCTACCGGCGCCGCTCCCGCTCCTCGTCCCGCTCCACAGACCCCTCGCACTCCCGCGACGCCTCACCGGTGGGCTTGAAGGGTTTCGGGGCTCTGCCCTCCACCGAGATCTCCATGTACACACTCACCCGCGGGGGCGACACCCTAAAGGGCGGCCACGGCACCCCCACCGCCACCTACAATTCGGAGAGGGACCACAACTTCCTGCAGGTCCACAACTGCATCCAGAAGGACCTGAAAGACTCATCCCACACCAACACAGCCAACCGACGCACCACCCCCGTATGAGGCACAACCTCCCCCACATAGATAGCTGGGCAAGGGAGATGGGAGCAGGGCAGAGATGGGGCGGAGGCCCTAGATATGAAAGATCAAACTTCATGTACCATGCGTTTTCACGATTTGGAAGGAACCGGGAGGATTTTTACGTTTCGATCAAAGATTACACATGTATGCATGATTTTGCCATTTGCCATTGACAAAATGAGGCTGGTCTGAAATGGAGAGAGGCTATAAGAGATATGCAGAGGGGCACTTTCGGCCCGCGACATGGGAGCTGTAGCTTGTGGCATTGatttgacatgtttttattaaggaAACATTTCACCACCCATCGGTCTACATGGATCAACAAGCTACTGCTCCCTCATAAGTCTTTTCCCCTCTCCCTTATattcatcatatttatttatttgctcatttgttatttgcattaaaaaaaaaaaactaaaaaaacaaaacaaaaaaaaactgtgaaccACTGCAGTAAGGTATTCAATAAGAAATAGCCCGGTCTGCAATCTCTTACAAAAggtacaatatatatacatatagtatatatatatatatatgtatatataaattttataaataaattaacataataatCAAGACTTTTCTGAggcaaaaaaagtcaaactgcTGTTTGCTGGGTAATGATCTGTTGGAAAAGAGACTCTGTGTCCCCGAGCTGCGACCGTAGCTGGACGACGGACGAAATCACAGAGGATCTTCACTGCAAAGCTGCTGTAACACGAGACTGACAAAGACATTCAACCTTAGACAAAATtctattcttttaaaagaacCTTCTCATCTTTTTCTCAGTCCCTgtttgcttccttttttttctctactcTCGCATTCGGTCGTCATGGGAGCGAACGACAGAAAAACAAACGCAAACCCCTTCGCTGGCACGGGCGACAAAAAGGGGTCAGAGTTCGCTGAAAGACTCCAGAAACGACTGCCAAGACGAAAAAAAGGAAGGAGGAGGGGGGAGGAAAAGAAGAGGATGCTGAACTCTTAATAAATACTTGCAAGAACGCAAGGCGAATAAAGTACGAAATATTATGAGAAACGAAGCTAAGTGACTCACGAATACAAAGATTAAATGCATGCTATAAATTTACAGCAAACCTGCTCTTGAAACTTAAGTTTTAAAggataatgataattataaagGGAAAAGCaatgttaaaaaagttaaatattaatgttttgtgtactctttctgttttggtttttattattattaattatattattattataattaatcattataataatatactttgGTGATTAACCAAGCAAAGGAATTATGacaaaactgctttttaaattcTGAGTTGTTTCTTTGTATCCATGTGTATTTCTtttacttatttctttttttttttctcagaatcaCACGCCTTAGTCATTTCGTATTTCTttggattcattttaaatgtgtcgTTTTCTTTGAAATGAAATCTAAAGGTGCCAAAACAGAATGATCCTAAACTTGGATGCATCAAGTCCTGatgaataaacagacaaacccAAGGGGGAACAAA

Function

symbol description
cacng2a Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Acts upstream of or within AMPA selective glutamate receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Is expressed in brain and central nervous system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 10. Orthologous to human CACNG2 (calcium voltage-gated channel auxiliary subunit gamma 2).
cacng2 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-2 subunit

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225671.1 True 3975 mRNA 0.45 4 10711327 10769397

Neighbor

gene id symbol gene type direction distance location
eif3d eif3d,LOC107732884,LOC107690232,LOC107680878 coding upstream 32646 10672523 ~ 10678681 (+)
sstr3 sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886 coding upstream 50243 10645904 ~ 10661084 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding upstream 72731 10626162 ~ 10638596 (+)
fam83fa fam83fa,LOC107690234,LOC107551173,LOC107732892,LOC107561349,LOC107680871,LOC107733829 coding upstream 93746 10607636 ~ 10617581 (+)
grap2a grap2a,LOC107690235,LOC107680873,LOC107561352,LOC107732893,LOC107733828,LOC107551143 coding upstream 103818 10595644 ~ 10607509 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding downstream 48333 10817730 ~ 10820947 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding downstream 104840 10874237 ~ 10885623 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding downstream 179281 10948678 ~ 10954729 (+)
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 208752 10978149 ~ 11006634 (+)
cldni LOC107729510 coding downstream 509340 11278737 ~ 11281741 (+)
G18794 NA non-coding upstream 8521 10702294 ~ 10702806 (+)
G18790 si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107680847,LOC107732904 non-coding upstream 9691 10700787 ~ 10701636 (+)
G18792 NA non-coding upstream 10708 10700277 ~ 10700619 (+)
G18763 NA non-coding upstream 46795 10663246 ~ 10664532 (+)
G18757 NA non-coding upstream 72034 10639089 ~ 10639293 (+)
G18807 NA non-coding downstream 17958 10787355 ~ 10789666 (+)
G18817 NA non-coding downstream 42427 10811824 ~ 10812786 (+)
G18828 NA non-coding downstream 57681 10827078 ~ 10828835 (+)
G18847 NA non-coding downstream 150963 10920360 ~ 10920871 (+)
G18824 NA non-coding downstream 162974 10932371 ~ 10970464 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 12787 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 607866 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 911531 9798815 ~ 9799796 (+)
G18491 NA other upstream 961447 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 1013412 9692949 ~ 9697915 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 564344 11333741 ~ 11335825 (+)
G18949 NA other downstream 599496 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 1003803 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 1116258 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 1257752 12027149 ~ 12049422 (+)

Expression


Co-expression Network