mrps34 (mrps34,LOC107567325)


Basic Information

Item Value
gene id mrps34
gene name mrps34,LOC107567325
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20328156 ~ 20331230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225682.1
CGGTTTTACTGACGCACAGCGGGAGGCGTGACATATTTGTGGAGGTCAAGTCAAACAGAAAGTCAGCATGGCAAAGAAGAAGCGTCTGCGGCTCATAGCCGAGATGGCCCGGAAGATCCGGGCTTACAGGGCGCTAAAGAATCGACCCCAGGACTCTCAGCGCTATGCCCTGGACTACGACACCATGACACGACCCTTCACTGGAAAAATGCTGCCAGTGTTGGCTTGGAAAGATGTACGGCAGGAAACGCGCCTCTTCACGTTACTGGCCGGCATGCGCATGTTTGGTGTGGGTCGACTCTTTACACGCAAGTCGTGGCTGGATGAGCACACAGAGCCCTGCTACTGGAAAATAACAAAGGTCAAGGTGGATTATACAGCAGAGAACATGGATCATGGAAAAGCATGGGGCGTTCTAACATTTAAAGGTAAAGAGGAGCCTGGAGAGCGTGAAGTGGAGAAGGTGATGTACCATGACTGGCGACTGGTGCCCAAACACGAAGAAGAGGTGTTCAAGCGCTGTGAACCCGTCCCTGAGCCCCCTGTGCGTTACGTGATACCCCCTCTCCTGCGTGCGATGATCCTGGCCCAGCAAGCCAATCAGCTGGGTCTAGATCCCAGCTCTATCCCAGAGCCCACTTTCCCATTGAAACGGGATGTTGTGCTCGATAATGAGTACAAGAAGAAACTGGAGGGTACACCTGTCTGATGCTCCGCTCTACTTCACAGGGGTTAAGGTTATGGCGAGGAGATCTAGGTTCTGTTTCAGTGTTCTTGATAGGAACAGCTTGTTCTGTTCCTAATTTTATAGGCACTGCTGGCTGCTTAAAGACTAGTTTGCGTTTTAATGCtatattttggtaaaaaaacaaaatatagccTTATGTTTTCATCTATGTTTCTGGGGTCATGCGGCTAGTGATGGCGGAGGGAAAAAGGAGATCTGTTTGGACATGTGATCAAACCCAAAAGATAATCCTCTGTGAAAAGACTTTCTTCGTCCTCGAGTTTTTTTGTCTTCAAGTTAATATCAGTGTCATGTTCTTTACAGTATGTGAGATAAATACGAAATTCTATGCTTTATTGTCAAGTGAGTagtctaaatttaaaaatgagttctctcaatgtttttttttttaataaaataagtgcATATTTAAACCCGGTGTGTATGTACTTTACAGTATTGGTGcaaatttaatgtaaaagaaaaagtgtCCTGCATTTTTCATGTCACTACCACAACAGCATATCTTGGAAATATTCCTGTCCCCCCCTTATTATTCCTTAACTTATGAAAGTACACCACTGTTCATAACGGTGTTAACCATGTGTTGATTAGTTTTGAAGCTAGGTCTGAAATGCTATCTAAAATTGTCAATAAGAAAACATTGTCATAATTGTTCCGGTTGTGACAAAAGGGAACGCACCATCATGTTttggtaaaaataaacaaaatcttaGTAGAATTAtgcggggttttttttggtttgttttaatatgcGATTCTGTAACGTGATATTGTGCCCCGTTTCGGCGCCCGTTTTTTAATGACTATTTTCTGCATATAAAGTTGATATGCG

Function

symbol description
mrps34 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 32. Orthologous to human MRPS34 (mitochondrial ribosomal protein S34).

NR:

description
28S ribosomal protein S34, mitochondrial

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17412 MRPS34; small subunit ribosomal protein S34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225682.1 True 1583 mRNA 0.43 5 20328156 20331230

Neighbor

gene id symbol gene type direction distance location
spsb3a spsb3a,spsb3,LOC107689049,LOC107670907,LOC107745892,LOC107754412 coding upstream 604 20321945 ~ 20327552 (+)
atp6v0ca LOC107754334,LOC107567372,LOC107552490,LOC107745898 coding upstream 7866 20316318 ~ 20320290 (+)
trnac-gca_3 NA coding upstream 13825 20314260 ~ 20314331 (+)
lasp1 LOC107754308,LOC107745925,LOC107552489,LOC107689048,LOC107567378,LOC108413872,LOC108258608,LOC107670908 coding upstream 18696 20296472 ~ 20309460 (+)
arl5c arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527 coding upstream 37679 20287163 ~ 20290477 (+)
nme3 nme3,LOC107661191,LOC107689099,LOC107567334 coding downstream 104 20331334 ~ 20334050 (+)
cramp1 cramp1,LOC107661046,LOC107745824,LOC107689053 coding downstream 36215 20367445 ~ 20382139 (+)
dhrs7b dhrs7b,LOC107745957,LOC107755107,LOC107689054,LOC107661099 coding downstream 51042 20382272 ~ 20386834 (+)
LOC122341693 LOC107739398,LOC107754510,LOC107661018,LOC107689062 coding downstream 99139 20430369 ~ 20443456 (+)
LOC122342178 LOC107661000,LOC107567245,LOC798483,LOC107754527,LOC107552447 coding downstream 113678 20444908 ~ 20451990 (+)
G21655 NA non-coding upstream 14012 20230015 ~ 20314144 (+)
LOC122342124 NA non-coding upstream 142630 20173694 ~ 20185526 (+)
G21652 NA non-coding upstream 155154 20168636 ~ 20173002 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding upstream 166945 20160436 ~ 20161211 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 357737 19954076 ~ 19970419 (+)
G21660 NA non-coding downstream 8661 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 9842 20341072 ~ 20342296 (+)
G21669 NA non-coding downstream 62331 20393561 ~ 20393901 (+)
G21671 NA non-coding downstream 76562 20407792 ~ 20408327 (+)
G21687 NA non-coding downstream 149101 20480331 ~ 20518038 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 132435 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 214658 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 258903 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 924980 19399408 ~ 19403176 (+)
G21213 NA other upstream 1035815 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 550968 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 964472 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1306513 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1644022 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1645279 21976509 ~ 22025911 (+)

Expression


Co-expression Network