LOC122329464 (rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173)


Basic Information

Item Value
gene id LOC122329464
gene name rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18956030 ~ 18959493 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225694.1
TCATACAGATGATTGCGCGCGCAGCGTTCTTCTTTGTTCTCGCGAGAGTACATTTTTCCCTAATCGCACCGCGCGCACCTCTTCCTTCCTCTTTCCGCCATATTGCAGAACTGGCATCATGGTGCGCATGAACGTTCTCGCTGATGCGCTGAAAAGCATCAACAATGCTGAGAAACGTGGGAAACGCCAGGTTCTCATCAGGCCCTGCTCCAAAGTCATAGTGCGCTTTCTTACTGTGATGATGAAGCACGGTTACATTGGCGAATTTGAGATCATCGATGATCACAGAGCCGGGAAAATTGTCGTCAATCTAACAGGAAGGCTGAACAAGTGTGGTGTCATCAGCCCACGGTTCGATGTCCAGTTGAAGGATCTGGAGAAGTGGCAGAACAACCTTCTCCCATCCAGACAGTTTGGATTCATTGTTTTGACGACCTCAGCTGGCATCATGGACCACGAGGAGGCCAGACGAAAACACACAGGAGGAAAAATCCTTGGGTCTCTTTttctaaaacatgtaaaatcgCCAACAAATAAACATTGGAAGACAAGTcgtgtgtgcttttgttttcttaatgcACAACATGCCATGTACTCGTTCACACACTTGGTAAAGAATGCATTAATGCACACCTCCAGTGAAAGCAGTTGTTTTGATTGACACCTTGTTTTTGGC

Function

symbol description
rps15a Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including brain development; chordate embryonic development; and erythrocyte differentiation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 20. Orthologous to human RPS15A (ribosomal protein S15a).

NR:

description
PREDICTED: 40S ribosomal protein S15a-like

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0045787 positive regulation of cell cycle biological_process
GO:0009615 response to virus biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005784 Sec61 translocon complex cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02957 RP-S15Ae, RPS15A; small subunit ribosomal protein S15Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225694.1 True 676 mRNA 0.47 5 18956030 18959493

Neighbor

gene id symbol gene type direction distance location
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding upstream 236308 18714925 ~ 18719722 (+)
retreg3 fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130 coding upstream 244395 18704513 ~ 18711635 (+)
LOC122341319 psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134 coding upstream 381611 18572664 ~ 18574419 (+)
LOC122341960 llgl1,LOC107720045,LOC107674688,LOC107703430 coding upstream 389424 18550993 ~ 18566606 (+)
LOC122342138 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 coding upstream 405603 18545034 ~ 18550427 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding downstream 162830 19122323 ~ 19128648 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding downstream 243986 19203479 ~ 19261885 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding downstream 333308 19292801 ~ 19297531 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding downstream 417482 19376975 ~ 19380629 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding downstream 425529 19385022 ~ 19393198 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 101487 18854109 ~ 18854543 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding upstream 211445 18574687 ~ 18744585 (+)
G21180 NA non-coding upstream 252347 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 301315 18652361 ~ 18654715 (+)
G21076 NA non-coding upstream 797484 18158171 ~ 18158546 (+)
G21151 NA non-coding downstream 299424 19258917 ~ 19287649 (+)
G21215 NA non-coding downstream 345359 19304852 ~ 19305058 (+)
G21239 LOC107687002 non-coding downstream 478514 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 495933 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 511506 19470999 ~ 19472687 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 79903 18869266 ~ 18876127 (+)
G21124 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693 other upstream 112611 18443390 ~ 18843419 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 114270 18828665 ~ 18841760 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other upstream 222265 18733165 ~ 18733765 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other upstream 223932 18725961 ~ 18732098 (+)
G21202 NA other downstream 31965 18991458 ~ 18993234 (+)
G21213 NA other downstream 331952 19291445 ~ 19292341 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other downstream 439915 19399408 ~ 19403176 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 1104777 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 1135358 20094851 ~ 20113498 (+)

Expression


Co-expression Network