LOC122329533


Basic Information

Item Value
gene id LOC122329533
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11979763 ~ 11982000 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225818.1
GTCTCAGCTGCTTGCAAGATTATACATTTGTTGGCAGGCATGAAATGCTTTCATTTGAACAGAAACAGACAACGATCGAGCGCAGAGGCTAAACAGAAAGGTTAAAATGGCTGAGCTGAGAATTGTTTTGTTGGGTAAACAAGGAGCAGGAAAGAGCGCTTCAGGAAACACTCTTCTGCGTAGTCAGTCATTCCACACAGCGGCAGGCTCAGAGCGAGTCACTCGCACCTGTGTAATGGGTAGGTCCACTTTAGACGAGCAAGAAATCAAAGTGATTGACACTCCTGGGTGGTGTGATTCACCTCAGTTGGAGACTGACATCAAGCAGGAAATCATCAGATGCATTAGTATGTCCAGTCCTGGGCCACATGTGTTTCTGTTGGTGCTGCCCATCGGCAGATTTACCAATGAAGAGATAAATACGGTCATGAATATCATGAAGGAGTTTGGGGATGAAGTCAGCAAATACATGATCGTGCTATTCACCAAAGGAGATGATCTGGAGGAGAGGCCTATTGAAGACTACCTAAAAGAACTTCACTCAGATCTGAAAGCAATCATTCAGATTTACGGTGGAAGATATCACGTCTTTAACAACAGAGACAAAAGCAACCAGAAACAAGTCTCTTCTCTTCTGATGAAGATCAATAAGATGGTGGAGAGGAATGAGGAAAAATGTTACACAACAGCCATGTATCAAAAAGCGAAGGACCAAAAGAGTGATGAGGGCAGACAACAATGTAGGAGAGAAAAGGATAATTCAGTTCCAGACGAAAGCAAAAGTCACTCTACAAATCAAAATGGAGATAAGAGAAGCAGACACGATGGTATGAAAGGTAGAGAGCACAGAGGTATATCAGAGGCCGGAAAGGAGTGTTCACAGAAATGGAAAACGCAACAGCAAACCAGAGATACACAACACAGAGAGTGTGAAAGAATAAAGCAGTTCACAATGGAAGTAGAAAGTGAAAAATGGGAGAAAGGAGAAgaacagagaagaagagaaaagcCTGGAGAAGATGACAAAAGACAGAGGAGTTACGAGGTTGATGATGCCATTAGGAGATATGGAGAAGAAAATGGAGAAATATCAAgggaaataaaaacactaaaacatactataaaacagttaaatgaatcaataattaaaaatgatgctttaaagTGTATGTGGAGTAATGAGAGGGACaaattaataactaaaatacATGAACTGAAAACAGAGGTAATGATTAAGAATAATGAGCTTAAACAAGCAGAAATGAAGAATGAAGAattaaagcaacagtttaaaGAACAAACTGAGATGTTTGAGAAGATGGAAAAATTATGGGCTCAGCAAAAAACacaagatgaaaaaacaaaatcacatgcTTTCTTCGATTTTTttcaaagtttatttaatttaaaatgacccATATTACTATCACCATAGTGTTTGCAATGTTTAACATGATCATTACAAACATCATGtgatatcaaaataatatatccacatatatgcataattcAACCCAGAGGCATTTAAGGTACCGAATTTTGATTGAAATGCACTTTTCTGTTATTCTCTTCTAACTCAGATTCAGACTTtgtataagaaatgtttcataaGCAGAGTAGTTtgagaaattaatgtttatggcacaatgttttattatgtatttcaCTAAGCAATGTGCATGATCCGCACATCAGTAAAGTTTGTCATGATTATTGTTGAAACAAAATATCCTATTCATTTAGGAATTACACTGTTCTTGTAAtacattaatgatttttttaatatatatataattgatgcctatttttgttatatatatttttttactatttctgTTCCAAGAGTTTTTACAAGGGACTATTTTCccttatttgaacaaaaatcatatcaaaatatataatgcgGATGCATATGTAATGCATATAATGTTCTTACGTTATGTGcaagtcatttatttctaaacTTTATATGTGTTGTGCTGTTTTGTGTGTAATGTAACTATTACGTACACAATAAAGGGATATTAAAAAGAA
>XM_043225827.1
TGAAATGCTTTCATTTGAACAGAAACAGACAACGATCGAGCGCAGAGGCTAAACAGGTTAAAATGGCTGAGCTGAGAATTGTTTTGTTGGGTAAACAAGGAGCAGGAAAGAGCGCTTCAGGAAACACTCTTCTGCGTAGTCAGTCATTCCACACAGCGGCAGGCTCAGAGCGAGTCACTCGCACCTGTGTAATGGGTAGGTCCACTTTAGACGAGCAAGAAATCAAAGTGATTGACACTCCTGGGTGGTGTGATTCACCTCAGTTGGAGACTGACATCAAGCAGGAAATCATCAGATGCATTAGTATGTCCAGTCCTGGGCCACATGTGTTTCTGTTGGTGCTGCCCATCGGCAGATTTACCAATGAAGAGATAAATACGGTCATGAATATCATGAAGGAGTTTGGGGATGAAGTCAGCAAATACATGATCGTGCTATTCACCAAAGGAGATGATCTGGAGGAGAGGCCTATTGAAGACTACCTAAAAGAACTTCACTCAGATCTGAAAGCAATCATTCAGATTTACGGTGGAAGATATCACGTCTTTAACAACAGAGACAAAAGCAACCAGAAACAAGTCTCTTCTCTTCTGATGAAGATCAATAAGATGGTGGAGAGGAATGAGGAAAAATGTTACACAACAGCCATGTATCAAAAAGCGAAGGACCAAAAGAGTGATGAGGGCAGACAACAATGTAGGAGAGAAAAGGATAATTCAGTTCCAGACGAAAGCAAAAGTCACTCTACAAATCAAAATGGAGATAAGAGAAGCAGACACGATGGTATGAAAGGTAGAGAGCACAGAGGTATATCAGAGGCCGGAAAGGAGTGTTCACAGAAATGGAAAACGCAACAGCAAACCAGAGATACACAACACAGAGAGTGTGAAAGAATAAAGCAGTTCACAATGGAAGTAGAAAGTGAAAAATGGGAGAAAGGAGAAgaacagagaagaagagaaaagcCTGGAGAAGATGACAAAAGACAGAGGAGTTACGAGGTTGATGATGCCATTAGGAGATATGGAGAAGAAAATGGAGAAATATCAAgggaaataaaaacactaaaacatactataaaacagttaaatgaatcaataattaaaaatgatgctttaaagTGTATGTGGAGTAATGAGAGGGACaaattaataactaaaatacATGAACTGAAAACAGAGGTAATGATTAAGAATAATGAGCTTAAACAAGCAGAAATGAAGAATGAAGAattaaagcaacagtttaaaGAACAAACTGAGATGTTTGAGAAGATGGAAAAATTATGGGCTCAGCAAAAAACacaagatgaaaaaacaaaatcacatgcTTTCTTCGATTTTTttcaaagtttatttaatttaaaatgacccATATTACTATCACCATAGTGTTTGCAATGTTTAACATGATCATTACAAACATCATGtgatatcaaaataatatatccacatatatgcataattcAACCCAGAGGCATTTAAGGTACCGAATTTTGATTGAAATGCACTTTTCTGTTATTCTCTTCTAACTCAGATTCAGACTTtgtataagaaatgtttcataaGCAGAGTAGTTtgagaaattaatgtttatggcacaatgttttattatgtatttcaCTAAGCAATGTGCATGATCCGCACATCAGTAAAGTTTGTCATGATTATTGTTGAAACAAAATATCCTATTCATTTAGGAATTACACTGTTCTTGTAAtacattaatgatttttttaatatatatataattgatgcctatttttgttatatatatttttttactatttctgTTCCAAGAGTTTTTACAAGGGACTATTTTCccttatttgaacaaaaatcatatcaaaatatataatgcgGATGCATATGTAATGCATATAATGTTCTTACGTTATGTGcaagtcatttatttctaaacTTTATATGTGTTGTGCTGTTTTGTGTGTAATGTAACTATTACGTACACAATAAAGGGATATTAAAAAGAA

Function

GO: NA

KEGG:

id description
ko03060 Protein export
ko03070 Bacterial secretion system
ko02024 Quorum sensing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225818.1 True 2034 mRNA 0.35 2 11979763 11982000
XM_043225827.1 False 1990 mRNA 0.35 2 11979803 11982000

Neighbor

gene id symbol gene type direction distance location
prl LOC107730739,LOC107554085,LOC107689711,LOC107658486 coding upstream 705 11976888 ~ 11979058 (+)
LOC122336110 LOC107583028,LOC107658478,LOC107583029,LOC107729487,LOC107729488,LOC107658480 coding upstream 94764 11878905 ~ 11884999 (+)
LOC122336152 LOC107583029,LOC107729488,LOC107583028,LOC107658478,LOC107658479,LOC107729487 coding upstream 98876 11857788 ~ 11880887 (+)
LOC122333296 NA coding downstream 2546 11984546 ~ 11986105 (+)
ap2a1 ap2a1,LOC107730730,LOC107554102,LOC107729492,LOC107658487,LOC107583017 coding downstream 13095 11995095 ~ 12013540 (+)
si:ch211-195b15.8 LOC107658488,LOC107729553,LOC107689670,LOC107554105,LOC107730733,LOC107583083 coding downstream 33005 12015005 ~ 12018012 (+)
rras rras,LOC107583016,LOC107729461,LOC107658490,LOC107730736,LOC107554112,LOC107689668 coding downstream 37174 12019174 ~ 12023434 (+)
prrg2 LOC107730734,LOC107583014,LOC107554111,LOC107729459 coding downstream 42187 12024187 ~ 12026934 (+)
G19208 NA non-coding upstream 5757 11967648 ~ 11974006 (+)
LOC122338225 NA non-coding upstream 144510 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 260184 11712609 ~ 11719579 (+)
G19126 NA non-coding upstream 538425 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 542566 11436944 ~ 11437197 (+)
G19255 NA non-coding downstream 90719 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 92231 12074231 ~ 12074503 (+)
G19263 NA non-coding downstream 136538 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 150629 12132629 ~ 12134957 (+)
G19287 NA non-coding downstream 245935 12227935 ~ 12228520 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 86107 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 145839 11773200 ~ 11833924 (+)
G18949 NA other upstream 610011 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 643938 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 1137256 10752759 ~ 10842507 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 45149 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 110603 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 132048 12114048 ~ 12117939 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 250427 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 321364 12303364 ~ 12315046 (+)

Expression


Co-expression Network