LOC122329549 (chchd5,LOC107711181,LOC107757370,LOC107672451,LOC107670463)


Basic Information

Item Value
gene id LOC122329549
gene name chchd5,LOC107711181,LOC107757370,LOC107672451,LOC107670463
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9065001 ~ 9066803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225847.1
ATCGAATTCCCCCTGCGAGAGCGCGGACGTTCCCCACGCGCACGTGCGTGATGTGATAGTAACCTTGACGAAAACCGGGTGAATTCAACATGGAGGCAGCAATGGCCATCACGACCAAATACTGCCAGAAGGAGCTGGAGGAATACGGTACATGTGTTGTCTCCCATCCAGCGACATGGCAAGAGAAGTGTGTAGACCTGAAGCTGAGGGTGGCACAGTGCACTTCATCACATCCTGTGATAAGAAAGATCCGGAGCGACTGTGCTGGGGAGTTCTCAGTGTTTGAGCGCTGTCTGCGGGAGAACCAGAGCTCTGCTGAAGCCTGTCAACCTCATCTCACACGTTTCCTCGCCTGTGTTGAGACCGTCGACCTTTCAGGAATAGCAAATGCTGCGCCACAGCCtacgtagttttttttttttctccactgtTCTGGATAATGAGGACAATAAGATGTGTTATATACTCAGTACCGGGAAGAAATGGGCTGCGGAGAAGTATTATCTTTGAAGaactgcaacacacacacacacagaaaagaaacaaaCCTCAGTCTTTTGCACACCCcccccctcaaaaaaaaaaaaaaataatgatgtcttatacttttttttttttgttttgttttgttaatggAATGTTTCACAGTATTTATGAGATTTTTACAagattgtttttgtcttgttttcccttaatcacagttttcttttttttcctttttaaacaagacatttaactagatattttggctgaaaactaaaaaaaaataaatctagaaaagcattttttgtagtttaaaaGGTTCCATGATATTCATGACATGAAAGTTGCAATAAAATACGCATTTCTAAATTCTT

Function

symbol description
chchd5 Predicted to be located in mitochondrial intermembrane space.

NR:

description
PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225847.1 True 857 mRNA 0.41 4 9065001 9066803

Neighbor

gene id symbol gene type direction distance location
LOC122332528 LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532 coding downstream 73082 8989124 ~ 8991919 (-)
LOC122341290 LOC107725336,LOC107573036,LOC107698059,LOC107758357,LOC108425688,LOC107661082,LOC107676879 coding downstream 235510 8805688 ~ 8829491 (-)
LOC122330990 LOC107656950 coding downstream 350806 8712478 ~ 8714195 (-)
pde6hb LOC107724721 coding downstream 527420 8535111 ~ 8537581 (-)
LOC122341497 NA coding downstream 529959 8530826 ~ 8535042 (-)
lpar2a lpar2a,LOC107711250,LOC107672473,LOC107587950,LOC107672513,LOC107757366,LOC107670534 coding upstream 63009 9129812 ~ 9132805 (-)
nr5a5 nr5a5,LOC107711258,LOC107672469,LOC107587942,LOC107757363,LOC107670482,LOC107563324 coding upstream 179573 9246376 ~ 9251223 (-)
soul5 LOC107672470,LOC107587943,LOC107757348,LOC107563322 coding upstream 185508 9252311 ~ 9254408 (-)
shfl zgc:171711,LOC107757360,LOC107563321,LOC107670471 coding upstream 188638 9255441 ~ 9260491 (-)
notch3 notch3,LOC107711261,LOC107587940,LOC107757359,LOC107670473,LOC107563318 coding upstream 198970 9265773 ~ 9294849 (-)
G18326 NA non-coding downstream 42695 9021920 ~ 9022306 (-)
LOC122342131 NA non-coding downstream 57002 9007613 ~ 9007999 (-)
G18273 NA non-coding downstream 62589 9002137 ~ 9002412 (-)
LOC122341612 NA non-coding downstream 291596 8767455 ~ 8773405 (-)
G18193 LOC107573033,LOC107758359,LOC107732521,LOC107569877 non-coding downstream 385844 8482647 ~ 8679157 (-)
G18320 NA non-coding upstream 58153 9124956 ~ 9127729 (-)
G18357 NA non-coding upstream 66811 9133614 ~ 9133813 (-)
G18378 NA non-coding upstream 115736 9182539 ~ 9183271 (-)
G18388 NA non-coding upstream 131805 9198608 ~ 9199702 (-)
G18426 LOC105357980 non-coding upstream 346601 9413404 ~ 9414007 (-)
zgc:113210 NA other downstream 57558 8992714 ~ 9007443 (-)
fmc1 NA other downstream 666173 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 845946 8218902 ~ 8219055 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other downstream 846913 8054039 ~ 8218088 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 67240 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 359769 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 927030 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1327511 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1945133 11011936 ~ 11064598 (-)

Expression


Co-expression Network