LOC122329718 (LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680)


Basic Information

Item Value
gene id LOC122329718
gene name LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1711295 ~ 1727693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226184.1
CAAACTGGTTTAAGATGTTTAGAGACTGCTCCCAGTTCAAATGTCAGTCCACCCACTTCTAATAAAGCTGATGAGAAGTTTCAGTTCAGCATCACTGCATTCAGCTGCTGAAGAGAGAGACCGAATCTGCAGCATCTCAGCTCAGCGTAATACAGCGAGAGACTGAAGAGACTGTGTGCAGGATGAGGTTTCTGATCTCTGTGTCGCTGCTGCTGTTGATTCGTGGTCCTACAGCCTCCAGCTCTGATCCCTGCAGTAACTACACCACTCTGGATGAATACTGGAGAGACATGCAGACGAACTACTACATGCCTTCGAGTAACGACGCTCTTGTTGAATGGAGGGGCTGGTATCGGCTGTATCTGAGAGGACTCAGCGCTCAGGTGTCCGAGTGGGTGTGTGAGTAACACTCAGTGCACCGTGAAACCGGACTGTTTCTCAATGGTTCTCATCCCGGACCGGCCGATGGAGTGGTGACCCGTGAAGTGCTGGGAACCTGGCAGGGCTCGTCTTCCTCTTGTGGCAGCTACAAATCCAACTCCATTCGAGTCAAAGCTTGTCCCGGAGATTACTACGTCTATGAACTTGTCAAACCCAGCGCGCCGACTAGGCCTGTGTACTGCGCAGTTGCTTTCCAAACCATCAGCAGTGATCCCTGCTACAACTACAAGTCTCTAGATCGTCCCTGGAGAGCCAACAATGAAAGTGGAGATTACATTTGTGATCTTTATTTCTCCTGGAACGGCTGGTACCGGCTTTTCTACCATGGAATGGACATCCAGCTGTCAGAGACCTGTGTTAGCTCATACAGATGTAACTCTCAGATTACTCTGTGGCTCAACGGTTCTCATCCTCGTATTCAGGATGGAGTGGTGGTCAGACAGGTCTGTGGGACTTCTGGAAGTCAATGCTGTGATTACAAAACAGGACCAATCAGAGTTAAAGCATGTCCAGGAAATTACTATGTCTATGAACTTGTGAGGCCAAACAGTTGGTGTGCGGGATACTGTACAaATATTAGCACCATTTCTCAGCCAATTTCCACTGTAAGTCCAGCTATAACCACTAGAATTGACAACTCTCTGAATTTTGACCCATGCATGAATTACAGCAGGCTCAATGACTACTGGAGAAACGTCAGGGATGGATATGGATACAATTACGATGACACAGATGTAAACTGGGATGGCTGGTATCGACTCTTTATTAATGGACTCAGTGCGCAGATGAATGAATGGTGTGTGTCTTATGCGACATGTGGAGGTTATAGTGCTCTGTGGCTTGCTGGATCTCATCCTCGAGTAGAAGATGGAGTTGTTACTCGTGACGTTTATGGCTCTCGTAATGAGAAGTGCAGTTATTACAGATCCAGCCCAATCCAAGTCAAAGCTTGTCCTGGGAACTATTTTGTATACAAACTTACCAGACCTTCTCTTTCAATCCCAGCTCCTACATATTGTGCAGTTGCTTTCCAAAGCATCAGCAGTGATCCCTGCTACAACTACAAGTCTCTGGATCGTCCCTGGAGAGCCAACAATGAAAGTGGAGATAacatttgtgatatttatttctCCTGGAACGGCTGGTACCGGCTTTTCTACTATGGAATGGACATCCAGCTGTCAGAGACCTGTGTTAGCTCATACAGATGTAACTCTCAGATGAGCCTGTGGCTCAACGGTTCTCATCCTCGGATTCAGGATGGAGTGGTGGTCAGAGAGATCTGTGGGAATTATGGGAGTCAGTGCTGCGAATACAAAACAGGACCAATCAGAGTTAAAGCATGTCCAGGAAATTACTATGTCTATGAACTTGTGAGGCCAAACAATTGGTGTGCGGGATACTGTACAAATATTAGCACCATTTCGCAGCCAATTTCCACTGTAAGTCCAGCTATAACCACTAGAATCAACAACACTCTGAATTTTGACCCATGCATGAATTACACCACACTCAATGACTACTGGAGAAACATCAGGTATCGATATGGATACAGTTACGATGACACAGATGTAAACTGGGATGGCTGGTATCGACTCTTTATTAATGGACTCAGTGCGCAGATGCCTGAATGGTGTGTATCTTACTCAACATGTGGAGGTTATAGTGCTCTGTGGCTTGCTGGATCTCATCCTCGACTAGAAGATGGAGTTGTTACTCGTGACGTTAACGGCTCTCATAATGAGCAGTGCAGTTATTACAGATCCAGCCCAATCCAAGTCAAAGCTTGTCCTGGGAACTATTTTGTATACAAACTTACCAGACCTTCTCTTTCAATCCCAGCTCCTACATATTGTGCAGtaCGTTTCACCCCCCCAAGTGTTGACCCATGCTACAACTATAACAGTCTGAATGAGGCTTGGAGAGCAACAAACAATTCTTACAGTGGTAACAATCTTAAGTGTGACAGCTTCCAGGAGGGCTGGTACAGGCTGTTCTACAATGATCAGAGTGCCCAGATGCCAGAATCATGCGTTAATCAATACATGTGTGGCACTTACATGTCAATGTGGCTCAACGGCTCTCATCCGCGGCTGGAAGATGGAGTGGTGACCCGTCAGGTCTGTGGCTCCGGATGGACTGGCTGCTGTACTTACAGATCTCTCCCTATACAAGTCAAAGCCTGTCCAGGAAATTACTATGTTTATGAGTTTGTCAACCCAATATTCTGTGGAGCTTACTGCACAGATGTCACAAGGCTTAATGCAGCCTcttcaacaacaacatcaacacCAGCAACAACAGCATTCATTACTCCAACCACTAGTGAAATGGATCACTGTTCTGAACTCAGCTGCTCTGAGGATGAacactgtgggaaaaaaaatggtgtttatGGCTGTTTGTGTAACACGAACCATTACGGACAGCAATCTGAATTTTTTGATTCCTCAGAAACCTGTGAAAGCAGCTCTGGCTCCATGTCTGTGTCTCGCTGTCAGCTCTTTGAGGCTGGTTATTCGGCTGATATCTTACATCTCAATGATCCCAGCTGCAGAGGAACAGTGAGGAATGGCAGAGTGGAATTTCATTTTGACAACGACGAGCACATCTGTGGAACAAACCTTGTGGCCAATGGCACCCACTTCATCTATGATAACTTCATTTTGGGAACACCGAGGTCAGAAGGCCTCATCAGCAGAGTGAAGGTTTTGAAGCTTTCTTTCAGCTGTGCTTAtcctcaaacacaaacactttccATGAATGTGGAAATCAACCCACTAGAGAGCATTGTGCACAAGAGCCTTCCAGCGGGTGAAGGCACGTATCGGGTTCGGATGATTCCATTTCAGGATGATAAGTTTACCCGGCCCTTCACTGGTGGTGTAGATGCAGAGCTCAACCAGGAGATGCACGTGGAAGTTCGTGCCGAGGGGGTTGACAGCCGGCAGTTTGCTCTGGTGATAGACACTTGCTGGGCTACACCGGTGAATGATCCTGATTACAGTCTCCGTTGGGATCTCATCGTCACAGAGTGTCCCAATCCAAATGACGACACGGTGGAGCTGCTCCAGAACGGCGTCTCAACCTCCAGCCGTTTCTCCTTCAAGATGTTCATCTTCACTGCAAACTCCACTAAGCTTTACCTGCACTGTGCTGTCCACCTTTGCCTTCTGTCAAGCAATCACTGCTCAGTGAACTGTAGCTCTGGGCAGCACTGGAGAAAGCGCAGGTCTCTGGACTTTCATGACAGTTCTTCCATATCCATGGGTCCTTTAATGTTGTCAGAAGGAAACACagATACGTGGGTCAAAGACAAAGTGAAGGTCTCCAAGGCATCTTCTCTGAGTGCTTCTCTGATGGTGTTGTTTGTCTTTATGATGAGTGTCttgattcttttttaaaacatctttgaataaaaatctgaatcatTTAACATACATATAATCTAATGCCATTGCAATTAAGTTGTCACTGATGTCAATCTGGTTGTGggtttataaatgtttcttttatacaGTTATAAAGGTGGCATTATAAGTGAATTGTtgtttaatcagttttattaatCATTGCATACTACTGTATCTGAATTTACTTGAGATGAACTGGAATGTTGGAATGGACTTCATGTTaattaaagtaatgcattaaaaga

Function

NR:

description
PREDICTED: alpha-tectorin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226184.1 True 4099 mRNA 0.45 19 1711295 1727693

Neighbor

gene id symbol gene type direction distance location
LOC122330144 tob2,LOC107572283,LOC107691089,LOC107745517,LOC107734722,LOC107672913,LOC107563731 coding upstream 10632 1693056 ~ 1700663 (+)
LOC122330255 pmm1,LOC107672914,LOC107691086,LOC100007686 coding upstream 24318 1680314 ~ 1686977 (+)
LOC122330554 NA coding upstream 47697 1660521 ~ 1663598 (+)
LOC122329650 NA coding upstream 109641 1590678 ~ 1601654 (+)
LOC122329645 NA coding upstream 131474 1567345 ~ 1579821 (+)
LOC122332958 NA coding downstream 677 1728370 ~ 1729997 (+)
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding downstream 139931 1867624 ~ 1870610 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding downstream 198054 1925747 ~ 1941793 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding downstream 274986 2002679 ~ 2010431 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding downstream 403525 2131218 ~ 2140821 (+)
G16008 NA non-coding upstream 6619 1689042 ~ 1704676 (+)
G16004 NA non-coding upstream 95766 1615160 ~ 1615529 (+)
G15944 NA non-coding upstream 220516 1485571 ~ 1490779 (+)
G15972 NA non-coding upstream 269553 1441259 ~ 1441742 (+)
G15967 NA non-coding upstream 296096 1414215 ~ 1415199 (+)
G16027 LOC107691092,LOC107572810,LOC107722836 non-coding downstream 43064 1770757 ~ 1979709 (+)
G16028 NA non-coding downstream 49293 1776986 ~ 1989269 (+)
LOC122330751 NA non-coding downstream 97097 1824790 ~ 1826317 (+)
G16033 NA non-coding downstream 127202 1854895 ~ 1855684 (+)
G16017 NA non-coding downstream 143587 1871280 ~ 1891027 (+)
trnar-ccu_1 NA other upstream 60567 1650656 ~ 1650728 (+)
G16003 pick1,LOC107734822,LOC106607154 other upstream 61801 1559387 ~ 1649494 (+)
trnar-ccu plbd1,LOC107563730 other upstream 87901 1620923 ~ 1623394 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other upstream 302369 1395847 ~ 1408926 (+)
G15955 NA other upstream 318445 1390739 ~ 1392850 (+)
trnar-ccu_2 NA other downstream 138020 1865713 ~ 1865785 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other downstream 296655 2024348 ~ 2320138 (+)
G16223 txn2,LOC107745512 other downstream 384344 2112037 ~ 2114339 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other downstream 432653 2160346 ~ 2165693 (+)
G16347 NA other downstream 840391 2568084 ~ 2568999 (+)

Expression


Co-expression Network