rangap1a (rangap1,rangap1a,LOC107745514,LOC107722837)


Basic Information

Item Value
gene id rangap1a
gene name rangap1,rangap1a,LOC107745514,LOC107722837
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2002679 ~ 2010431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226579.1
AACTACAAACCCCATGAACCTTTGCGCGCGTGCGCCGCTACGTCATCAGAACGAGCGGGAGGAAGAAACCGGGTGAAACAGAAATACATCTGCGCGCAGAAAATCTCATCAAACGACCGCTTTGGTGTCAAGATGGCATCGGACGACGTGGCGAACCTCGCCGCCTCATTGGCCAAAACTCAGGTCGATGAGGGCGAGCTCAGTTATAAAGGACAAGGCCTTAAACTGGACAACGCCCAGTCCGTGGAGACGATGGTGAAGGAGATCGAGGAGTTCGACGGCCTGCGCGCGCTCCGGCTGGAGGGGAACACCGTCGGCTTGGAGGCGGCGCGGACCATCGCCAAAGCCCTGGAGAAGAAGAGCGACCTGCAGTGCTGCCACTGGAGTGACATGTTTACCGGCCGCCTGCGAGCGGAGATCCCTCCAGCTCTGGTTTCTCTGGGCGATGCGTTGATCATGGCTGGAGCTCGGCTGAAGGTCCTGGATCTGAGCGATAACGCTTTCGGCCCCGATGGTGTGAAAGGCATCGAGCAGCTGCTGAGGAGCGCCGCCTGCCACACGCTGCAGGAACTGCGTCTGAACAACTGCGGAATGGGCATCGGAGGAGGGAAGATCCTGGCGGCGGCTCTGACGGTGTGTCACAAGGAGTCGAGCGCGCTCGGGGCCCCCTTGCAGCTGAAGGTGTTCATCGCAGGCAGGAACAGACTGGAGAACGACGGAGCCACAGCACTGGCGCAAGCCTTTCAGTTGATTGGCAGTCTAGAGGAAGTCCACATGCCCCAGAATGGCATCAATCACCCAGGAGTCACTGCTTTAGCCACAGCGATGCAGCACAACCCACAGCTACGAGTCCTGAACCTCAACGACAACACTTTCACCAAGAGAGGAGCGATCGCCATGGCACAGgcATTGAAACACCTGCGCAACGTGCAGGTGATAAATTTTGGCGACTGTCTTGTTCGGTCTGAAGGAGCCAGTGCTATAGCAGAGACCCTGAGAGAAGGACTGCCGATACTCAAGGAGCTGAATCTGTCTTTCGGGGAAATCACGGAGGAAGCTGCGTTGGAAGTGGCTCGATCCGTAAAGCATAAAGATCAGTTTGAAAAACTCGACCTGAATGgGAACAGTTTGGGTGAAGAAGGCTGTGATAATCTGCGGGAGGTAATGGAGAGCATGGACATGGCAGACAAACTGGGCACTCTGAGCGATGACGAGGGAGAGCCTGAGGAAGACGAAGATGAGGAGGAAGACgatgacgacgacgacgatgaagaagaagatgtggaggaagaagaggaggaggacgaagaagaagaggaggaggaggatgagggcGAGGAAGAGAAGAGTGAATTAAACCAGTTCTCGACGCCTCCTTCAGCGCCTCGGACTCCAGACGTCTCGTCTTTCCTCAGCTTTCCGTCTCCAGACAAACTCCTGCGACTCGGCGCAAAGAGAAGCTTCCTCATCCAGCAGCAGgTGGACGTGTCGGACGTCAGTAAGACCGTGGAGGCGTTCCTGAAGATCTCGTCGGTGTTTAAGGAAGACGACGGCGAGGTGAAGGCAGCCGTGCTGGAGAGCGTCGacgcAGTGCTGAGCAAGGCCTTCCTCACACCCTCCTTCCAGGGCTTGACCTTTATGTCGTCGTTGCTGGTGATGCTCGGACTGTTAAAGAGTGAAGACAAGCTGAAGCCGGTGAAGGTGGTCCCAGGACATCTACAGTGTCTGGAGCATGCCGTGAAACAGGGCTACTTCCCTCGAGAACACATCACCGTGCTGAAGGCTTTCATGGCCAGGCCGAATAAGTCTCTGGAGCCGTGCAGCAGCGCTCGAGACCGTCTGAAAACCACCCTCCAGAAACTCACAGCCGAGAGCTGAACAGCGCTCTTGCATCTGATTGTtaatattaaactgttataaCATGTCTCGAAA

Function

symbol description
rangap1a Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RANGAP1 (Ran GTPase activating protein 1).
rangap1 Enables GTPase activator activity; RNA binding activity; and small GTPase binding activity. Involved in activation of GTPase activity and negative regulation of protein export from nucleus. Located in several cellular components, including aggresome; nuclear membrane; and perinuclear region of cytoplasm. Colocalizes with kinetochore.

NR:

description
PREDICTED: ran GTPase-activating protein 1 isoform X1

GO:      GO:0005098,GO:0032853

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226579.1 True 1932 mRNA 0.56 16 2002679 2010431

Neighbor

gene id symbol gene type direction distance location
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 60886 1925747 ~ 1941793 (+)
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding upstream 132069 1867624 ~ 1870610 (+)
LOC122332958 NA coding upstream 272682 1728370 ~ 1729997 (+)
LOC122329718 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 274986 1711295 ~ 1727693 (+)
LOC122330144 tob2,LOC107572283,LOC107691089,LOC107745517,LOC107734722,LOC107672913,LOC107563731 coding upstream 302016 1693056 ~ 1700663 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding downstream 120787 2131218 ~ 2140821 (+)
LOC122341668 LOC107755616,LOC107672923 coding downstream 251179 2261610 ~ 2267508 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding downstream 257157 2267588 ~ 2270464 (+)
LOC122333376 NA coding downstream 282872 2293303 ~ 2296045 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding downstream 313269 2323700 ~ 2340093 (+)
G16028 NA non-coding upstream 13410 1776986 ~ 1989269 (+)
G16027 LOC107691092,LOC107572810,LOC107722836 non-coding upstream 22970 1770757 ~ 1979709 (+)
LOC122330717 NA non-coding upstream 58950 1942689 ~ 1943729 (+)
G16017 NA non-coding upstream 111652 1871280 ~ 1891027 (+)
G16033 NA non-coding upstream 146995 1854895 ~ 1855684 (+)
G16233 NA non-coding downstream 17963 2028394 ~ 2030843 (+)
G16243 LOC107755616,LOC107672923 non-coding downstream 33220 2043651 ~ 2046384 (+)
G16226 NA non-coding downstream 39754 2050185 ~ 2056000 (+)
G16219 myh9,LOC107745511,LOC107672897,LOC107691111 non-coding downstream 53134 2063565 ~ 2069715 (+)
G16238 myh9b,myh9,LOC106957010,LOC107751969 non-coding downstream 64729 2075160 ~ 2078850 (+)
trnar-ccu_2 NA other upstream 136894 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 137450 1619312 ~ 1865229 (+)
trnar-ccu_1 NA other upstream 351951 1650656 ~ 1650728 (+)
G16003 pick1,LOC107734822,LOC106607154 other upstream 353185 1559387 ~ 1649494 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other downstream 13917 2024348 ~ 2320138 (+)
G16223 txn2,LOC107745512 other downstream 101606 2112037 ~ 2114339 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other downstream 149915 2160346 ~ 2165693 (+)
G16347 NA other downstream 557653 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 630715 2641146 ~ 2646756 (+)

Expression


Co-expression Network