LOC122330032 (LOC107674481,LOC107727039,LOC107711806,LOC107563760)


Basic Information

Item Value
gene id LOC122330032
gene name LOC107674481,LOC107727039,LOC107711806,LOC107563760
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1395847 ~ 1408926 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226812.1
TCTTTAGTAGTTCGCTCATCCACAACCTGAAAGGCAGTTCACCTTTTAAGACTTCAGATGTAAAGAGAAGACGcagcgtgtttgtgtttaagttattttttaacacgTTTTCAGACGTGTTCTGGTAACGCGTTTTctttagaagtgtttttatatttggcACGAGTTTTTGGATCTGTTTGTTTGCCTGGTCGCTTCAGACGGATTCGTGATCTCCATCCTCAGTCGGTTTGATCTAATCAAATGACAGACAGCAGATTGACGGACCGCGACGGAAAACAGACGCGGATCCCTAACCGTCTGATCTCCGATGGAGTTGTTTGTGCGTTTCTAAACGGAACTGGAAAAACAACCAGAGACCGATGAACAGTGACATGATTGATTCGTTCGTGTCCCGTTATATTCGAGCTCTTCTTTGAGAGGAGTTACTGAAGCAAATGCGTTTATTTTTGTCCGGTCATGTGTTCACTAAAAGCTCTTCAGGACTGGTGTCGAGATGTTTGTGAAGGTTACTCCCATGTTCAGATCAGAGACATGAGCTCTTCATTCACAGATGGACTGGCTTTCTGTGCGATCATCCACAAACACAGACCCGATCTACTAGATTTTCACTCCCTGTCCAAACAGAACGTCTATGAGAACATGCGTCTGGCGTTTGACGTTGCGGAGCGTGAGCTGGGAATTCCTGCTCTTTTAGATCCAGATGAACTGGTGTCTGTGAAGGAGCCGGATCTTCTGTCCATCATCACTTACATCTCTCAGCTCTACAGTCTCTTTAGAGGAAACTCCCACGTGAGTCAGAAGATTCCTGTGAACAATGAATCCAGCAACTCCAAAACACGAGAACAGACACACACTAagTTCTCATCAGATGTGGTCAGATCGTCAAATAAGCGAGTCTGTAACGTCTGTCACACATGTGTTCATCTCATTCAGAGGGTTTTAGTAAAGGGGCGACTTTATCACCGCTCATGCTtcagGTGCAGTCGCTGTCGTCGCTCTCTGCTGCCGATCTCTTTCACAGTGGACAGTGAGAGACTGACATACAAGAACCTCCCAAACCTGCTCCCAGAAAGAGGGCAGGGCCTCAGGAACCTCCTCGCCCCTCCCCCAGATCACCGGATCATCGTCCTGACAACGAGCGGTGTCCGTAAGGAACATCCCTGGATGAAGCTGGTTGATCCTGGTCCTTGGTCTCGTCTTCCTCCTGTTCAACCTGCTCATTCTCGCCTCCGCCCCATGACCTTTAACCCTTTCCTGGAAGACAATGAGGAAGAGTCCAAGGATGAAGAGAAAAcctctttcagttatcaaaccCCAGCTGCACACAAACCCCAAACCTCATCTtcagttcccagcatgcaccaggCAGCAGCTTCTGTTTGTGGTTTCCCGCTCGTCAAGAGGAAGgtgaTGACAGACACACGCGTGTCGGAGAAGCAGGTGTGTGAGGAGCAGAAGAAGCTGGAGGAGCGTCTGCTGGAGCTGGAGAGAAGAGGAGTGCAGCTAGAGACTGAGATGAGGAGACGCAGTAACGAGAGTCTTCTAGTCGACTGGTTTCTTCTGATTCATGAGAAGAACATGTTAGTGCGCAGAGACACAGAGCTGGTGTATATggtgAAGCAGCAGCGTCTGGAGGATCAACAGGCTGATGTGGAGTTTGAGATCAGATGCCTCTTCAACAAACCAGAGCAGGACTGGAGCTCTGATGACAGACGTCAGGAACATGAGCTGATGTCACGCCTGCTGTCAATCATTCAGCAGAGGAATGACATCATCAGCAGCCTGGATCAGGACaggcagagggaggaggaggaggacgtgATGCTGACGGCTGTGATCCAGAGGATGGAGCTCCTGACACAGACGGACAAATCCAGCAGGAGCTTCAAACACCTTCAGATGTTCAAGAAATCCAGGCGTAAGACAGCTGAAAAACAGCTGAAGAGCACAAAGAgacagctttttaaataatgtcaaataatagaaaataaaactatCCATCAGGA
>XR_006247969.1
CTCTTTAGTAGTTCGCTCATCCACAACCTGAAAGGCAGTTCACCTTTTAAGACTTCAGATGTAAAGAGAAGACGcagcgtgtttgtgtttaagttattttttaacacgTTTTCAGACGTGTTCTGGTAACGCGTTTTctttagaagtgtttttatatttggcACGAGTTTTTGGATCTGTTTGTTTGCCTGGTCGCTTCAGACGGATTCGTGATCTCCATCCTCAGTCGGTTTGATCTAATCAAATGACAGACAGCAGATTGACGGACCGCGACGGAAAACAGACGCGGATCCCTAACCGTCTGATCTCCGATGGAGTTGTTTGTGCGTTTCTAAACGGAACTGGAAAAACAACCAGAGACCGATGAACAGTGACATGATTGATTCGTTCGTGTCCCGTTATATTCGAGCTCTTCTTTGAGAGGAGTTACTGAAGCAAATGCGTTTATTTTTGTCCGGTCATGTGTTCACTAAAAGCTCTTCAGGACTGGTGTCGAGATGTTTGTGAAGGTTACTCCCATGTTCAGATCAGAGACATGAGCTCTTCATTCACAGATGGACTGGCTTTCTGTGCGATCATCCACAAACACAGACCCGATCTACTAGATTTTCACTCCCTGTCCAAACAGAACGTCTATGAGAACATGCGTCTGGCGTTTGACGTTGCGGAGCGTGAGCTGGGAATTCCTGCTCTTTTAGATCCAGATGAACTGGTGTCTGTGAAGGAGCCGGATCTTCTGTCCATCATCACTTACATCTCTCAGCTCTACAGTCTCTTTAGAGGAAACTCCCACGTGAGTCAGAAGATTCCTGTGAACAATGAATCCAGCAACTCCAAAACACGAGAACAGACACACACTAagTTCTCATCAGATGTGGTCAGATCGTCAAATAAGCGAGTCTGTAACGTCTGTCACACATGTGTTCATCTCATTCAGAGGGTTTTAGTAAAGGGGCGACTTTATCACCGCTCATGCTtcagGTGCAGTCGCTGTCGTCGCTCTCTGCTGCCGATCTCTTTCACAGTGGACAGTGAGAGACTGACATACAAGAACCTCCCAAACCTGCTCCCAGAAAGAGGGCAGGGCCTCAGGAACCTCCTCGCCCCTCCCCCAGATCACCGGATCATCGTCCTGACAACGAGCGGTGTCCGTAAGGAACATCCCTGGATGAAGCTGGTTGATCCTGGTCCTTGGTCTCGTCTTCCTCCTGTTCAACCTGCTCATTCTCGCCTCCGCCCCATGACCTTTAACCCTTTCCTGGAAGACAATGAGGAAGAGTCCAAGGATGAAGAGAAAAcctctttcagttatcaaaccCCAGCTGCACACAAACCCCAAACCTCATCTtcagttcccagcatgcaccaggCAGCAGCTTCTGTTTGTGGTTTCCCGCTCGTCAAGAGGAAGgtgaTGACAGACACACGCGTGTCGGAGAAGCAGGTGTGTGAGGAGCAGAAGAAGCTGGAGGAGCGTCTGCTGGAGCTGGAGAGAAGAGGAGTGCAGCTAGAGACTGAGATGAGGAGACGCAGTAACGAGAGTCTTCTAGTCGACTGGTTTCTTCTGATTCATGAGAAGAACATGTTAGTGCGCAGAGACACAGAGCTGGTGTATATggtgAAGCAGCAGCGTCTGGAGGATCAACAGGCTGATGTGGAGTTTGAGATCAGATGCCTCTTCAACAAACCAGGACTGGAGCTCTGATGACAGACGTCAGGAACATGAGCTGATGTCACGCCTGCTGTCAATCATTCAGCAGAGGAATGACATCATCAGCAGCCTGGATCAGGACaggcagagggaggaggaggaggacgtgATGCTGACGGCTGTGATCCAGAGGATGG

Function

NR:

description
PREDICTED: MICAL-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226812.1 True 2009 mRNA 0.48 15 1395848 1408926
XR_006247969.1 False 1848 transcript 0.49 14 1395847 1402168

Neighbor

gene id symbol gene type direction distance location
LOC122330340 NA coding upstream 6148 1387484 ~ 1389699 (+)
LOC122329966 NA coding upstream 15821 1376449 ~ 1380026 (+)
LOC122332730 NA coding upstream 21557 1372532 ~ 1374290 (+)
LOC122329817 LOC100537134 coding upstream 160943 1230001 ~ 1234904 (+)
sox10 sox10,LOC107674484,LOC107711804,LOC107563722,LOC107727045,LOC107679477 coding upstream 170930 1217521 ~ 1224917 (+)
LOC122330593 polr2f,LOC107727050 coding downstream 6691 1415617 ~ 1418312 (+)
LOC122330185 micall1,LOC107727039,LOC107674481,LOC107711806,LOC107563760 coding downstream 41312 1450238 ~ 1453084 (+)
LOC122329871 NA coding downstream 48024 1456950 ~ 1463253 (+)
LOC122329679 NA coding downstream 99567 1508493 ~ 1516411 (+)
LOC122329687 NA coding downstream 108582 1517508 ~ 1525476 (+)
LOC122330682 NA non-coding upstream 10953 1383248 ~ 1384894 (+)
LOC122330723 NA non-coding upstream 114676 1279263 ~ 1281171 (+)
G15929 NA non-coding upstream 154800 1240346 ~ 1241047 (+)
G15927 NA non-coding upstream 180242 1215316 ~ 1215605 (+)
G15925 NA non-coding upstream 182219 1213325 ~ 1213628 (+)
G15967 NA non-coding downstream 5289 1414215 ~ 1415199 (+)
G15972 NA non-coding downstream 32333 1441259 ~ 1441742 (+)
G15944 NA non-coding downstream 76645 1485571 ~ 1490779 (+)
G16004 NA non-coding downstream 206234 1615160 ~ 1615529 (+)
G16008 NA non-coding downstream 280116 1689042 ~ 1704676 (+)
G15955 NA other upstream 2997 1390739 ~ 1392850 (+)
G15939 NA other upstream 104283 1290969 ~ 1291564 (+)
LOC122330066 NA other upstream 344696 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 386416 1005983 ~ 1009431 (+)
LOC122330463 NA other upstream 620313 754430 ~ 775534 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 150461 1559387 ~ 1649494 (+)
G16002 pick1,LOC107734822,LOC107734770 other downstream 210386 1619312 ~ 1865229 (+)
trnar-ccu plbd1,LOC107563730 other downstream 211997 1620923 ~ 1623394 (+)
trnar-ccu_1 NA other downstream 241730 1650656 ~ 1650728 (+)
trnar-ccu_2 NA other downstream 456787 1865713 ~ 1865785 (+)

Expression


Co-expression Network