LOC122330185 (micall1,LOC107727039,LOC107674481,LOC107711806,LOC107563760)


Basic Information

Item Value
gene id LOC122330185
gene name micall1,LOC107727039,LOC107674481,LOC107711806,LOC107563760
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1450238 ~ 1453084 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227052.1
CCTCTTTAGTAGTTCGCTCATCCACAACCTGAAAGGCAGTTCACCTTTTAAGACTTCAGATGTAAAGAGAAGACGcagcgtgtttgtgtttaagttattttttaacacgTTTTCAGACGTGTTCTGGTAACGCGTTTTctttagaagtgtttttatatttggcACGAGTTTTTGGATCTGTTTGTTTGCCTGGTCGCTTCAGACGGATTCGTGATCTCCATCCTCAGTCGGTTTGATCTAATCAAATGACAGACAGCAGATTGACGGACCGCGACGGAAAACAGACGCGGATCCCTAACCGTCTGATCTCCGATGGAGTTGTTTGTGCGTTTCTAAACGGAACTGGAAAAACAACCAGAGACCGATGAACAGTGACATGATTGATTCGTTCGTGTCCCGTTATATTCGAGCTCTTCTTTGAGAGGAGTTACTGAAGCAAATGCGTTTATTTTTGTCCGGTCATGTGTTCACTAAAAGCTCTTCAGGACTGGTGTCGAGATGTTTGTGAAGGTTACTCCCATGTTCAGATCAGAGACATGAGCTCTTCATTCACAGATGGACTGGCTTTCTGTGCGATCATCCACAAACACAGACCCGATCTACTAGATTTTCACTCCCTGTCCAAACAGAACGTCTATGAGAACATGCGTCTGGCGTTTGACGTTGCGGAGCGTGAGCTGGGAATTCCTGCTCTTTTAGATCCAGATGAACTGGTGTCTGTGAAGGAGCCGGATCTTCTGTCCATCATCACTTACATCTCTCAGCTCTACAGTCTCTTTAGAGGAAACTCCCACGTGAGTCAGAAGATTCCTGTGAACAATGAATCCAGCAACTCCAAAACACGAGAACAGACACACACTAagTTCTCATCAGATGTGGTCAGATCGTCAAATAAGCGAGTCTGTAACGTCTGTCACACATGTGTTCATCTCATTCAGAGGGTTTTAGTAAAGGGGCGACTTTATCACCGCTCATGCTtcagGTGCAGTCGCTGTCGTCGCTCTCTGCTGCCGATCTCTTTCACAGTGGACAGTGAGGTGGGTTTACTGCAGTGCAGTTATCCCTGCAGACCAGCTCCTAAACACAACCAGTCCACAAATCAACACTCACAGAGCAACACCAGTGAGACGGACGGAGACAGGAGTGAGACAAACAGAGACAGGAGTGAGACGTACGGAGACAGAAGCGAGACTGACGGAGACATGAGCGAGACAGACACAAACAGGAGAGAGATGCACGGAGACAGGAGTGAGATGGACAGAGACAAGAGCGAGACAGTTGGAGACAGGAGTGAGACGTACCAAGACGGGAGTGAGATGGACAGAAACAATAGTGAGACTTGCGGGGGAAAGAGTGAGATGTACGGAGACATGAGTGAGGCATACAGAGACAGGAGTGAGATGGGCAGAAACAAGAGTGAGACTTGCGGAGACAAGAGTGAGACTTACGGAGACAAACTTAATGAAGGACATCTTTCCTTCTCATCAGAGACTGACATACAAGAACCTCCCAAACCTGCTCCCAGAAAGAGGGCAGGGCCTCAGGAACCTCCTCGCCCCTCCCCCAGATCACCGGATCATCGTCCTGACAACGGTTAGAATCTTAATCTCTTTGTTACTGTAAGAGCCATTTTAGGGTTTTCTTTggattgtgtgcatgtgtgtccagTAGGGGTCACT
>XM_043227058.1
CCCTCTTTAGTAGTTCGCTCATCCACAACCTGAAAGGCAGTTCACCTTTTAAGACTTCAGATGTAAAGAGAAGACGcagcgtgtttgtgtttaagttattttttaacacgTTTTCAGACGTGTTCTGGTAACGCGTTTTctttagaagtgtttttatatttggcACGAGTTTTTGGATCTGTTTGTTTGCCTGGTCGCTTCAGACGGATTCGTGATCTCCATCCTCAGTCGGTTTGATCTAATCAAATGACAGACAGCAGATTGACGGACCGCGACGGAAAACAGACGCGGATCCCTAACCGTCTGATCTCCGATGGAGTTGTTTGTGCGTTTCTAAACGGAACTGGAAAAACAACCAGAGACCGATGAACAGTGACATGATTGATTCGTTCGTGTCCCGTTATATTCGAGCTCTTCTTTGAGAGGAGTTACTGAAGCAAATGCGTTTATTTTTGTCCGGTCATGTGTTCACTAAAAGCTCTTCAGGACTGGTGTCGAGATGTTTGTGAAGGTTACTCCCATGTTCAGATCAGAGACATGAGCTCTTCATTCACAGATGGACTGGCTTTCTGTGCGATCATCCACAAACACAGACCCGATCTACTAGATTTTCACTCCCTGTCCAAACAGAACGTCTATGAGAACATGCGTCTGGCGTTTGACGTTGCGGAGCGTGAGCTGGGAATTCCTGCTCTTTTAGATCCAGATGAACTGGTGTCTGTGAAGGAGCCGGATCTTCTGTCCATCATCACTTACATCTCTCAGCTCTACAGTCTCTTTAGAGGAAACTCCCACGTGAGTCAGAAGATTCCTGTGAACAATGAATCCAGCAACTCCAAAACACGAGAACAGACACACACTAagTTCTCATCAGATGTGGTCAGATCGTCAAATAAGCGAGTCTGTAACGTCTGTCACACATGTGTTCATCTCATTCAGAGGGTTTTAGTAAAGGGGCGACTTTATCACCGCTCATGCTtcagGTGCAGTCGCTGTCGTCGCTCTCTGCTGCCGATCTCTTTCACAGTGGACAGTGAGAGACTGACATACAAGAACCTCCCAAACCTGCTCCCAGAAAGAGGGCAGGGCCTCAGGAACCTCCTCGCCCCTCCCCCAGATCACCGGATCATCGTCCTGACAACGGTTAGAATCTTAATCTCTTTGTTACTGTAAGAGCCATTTTAGGGTTTTCTTTggattgtgtgcatgtgtgtccagTAGGGGTCACTCT

Function

symbol description
micall1 Enables identical protein binding activity; phosphatidic acid binding activity; and small GTPase binding activity. Involved in several processes, including plasma membrane tubulation; protein localization to endosome; and slow endocytic recycling. Located in late endosome and recycling endosome membrane. Is extrinsic component of membrane.

NR:

description
PREDICTED: MICAL-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227052.1 True 1679 mRNA 0.47 6 1450239 1453082
XM_043227058.1 False 1231 mRNA 0.46 7 1450238 1453084

Neighbor

gene id symbol gene type direction distance location
LOC122330593 polr2f,LOC107727050 coding upstream 31926 1415617 ~ 1418312 (+)
LOC122330340 NA coding upstream 60539 1387484 ~ 1389699 (+)
LOC122329966 NA coding upstream 70212 1376449 ~ 1380026 (+)
LOC122332730 NA coding upstream 75948 1372532 ~ 1374290 (+)
LOC122329817 LOC100537134 coding upstream 215334 1230001 ~ 1234904 (+)
LOC122329871 NA coding downstream 3866 1456950 ~ 1463253 (+)
LOC122329679 NA coding downstream 55409 1508493 ~ 1516411 (+)
LOC122329687 NA coding downstream 64424 1517508 ~ 1525476 (+)
cdc42ep1b LOC107579628,LOC107711548,LOC107711549 coding downstream 105267 1558351 ~ 1565942 (+)
LOC122329645 NA coding downstream 114261 1567345 ~ 1579821 (+)
G15972 NA non-coding upstream 8496 1441259 ~ 1441742 (+)
G15967 NA non-coding upstream 35039 1414215 ~ 1415199 (+)
LOC122330682 NA non-coding upstream 65344 1383248 ~ 1384894 (+)
LOC122330723 NA non-coding upstream 169067 1279263 ~ 1281171 (+)
G15929 NA non-coding upstream 209191 1240346 ~ 1241047 (+)
G15944 NA non-coding downstream 32487 1485571 ~ 1490779 (+)
G16004 NA non-coding downstream 162076 1615160 ~ 1615529 (+)
G16008 NA non-coding downstream 235958 1689042 ~ 1704676 (+)
G16027 LOC107691092,LOC107572810,LOC107722836 non-coding downstream 317673 1770757 ~ 1979709 (+)
G16028 NA non-coding downstream 323902 1776986 ~ 1989269 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other upstream 41312 1395847 ~ 1408926 (+)
G15955 NA other upstream 57388 1390739 ~ 1392850 (+)
G15939 NA other upstream 158674 1290969 ~ 1291564 (+)
LOC122330066 NA other upstream 399087 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 440807 1005983 ~ 1009431 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 106303 1559387 ~ 1649494 (+)
G16002 pick1,LOC107734822,LOC107734770 other downstream 166228 1619312 ~ 1865229 (+)
trnar-ccu plbd1,LOC107563730 other downstream 167839 1620923 ~ 1623394 (+)
trnar-ccu_1 NA other downstream 197572 1650656 ~ 1650728 (+)
trnar-ccu_2 NA other downstream 412629 1865713 ~ 1865785 (+)

Expression


Co-expression Network