LOC122330213 (plbd1,LOC107563730,LOC107572281,LOC107672894)


Basic Information

Item Value
gene id LOC122330213
gene name plbd1,LOC107563730,LOC107572281,LOC107672894
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1867624 ~ 1870610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227073.1
TGTGTGATGTGGAATGTCAGTTTATTATGTGTTTCTGTAACGAGCGACTAATAATAATGACTGGTGTGTGTTTCAGGCAGATTTTTGATCATTACACCAACATGTACCCGCAGCTGATCGAGAATCCCAAAACACTGCTGGCTGTCAAACGCTTCATGGCgaaGCAGGACGACTGGTCCCGGGCTCAGGTGAAGAGTAACTCGTCTGATCCTCTGTGGATTCACACGGGCCTGATCCTGGCTCAGCTGGACGGGCTGCAGGCCGGAGTCACCGACTGGGCCAAACAACACGGGAGGGCGCCTCTGTCTCAGTTTGCCTTCCAGTTCCTGAACGCGGTCGGTGATCTGCTGGATCTGATCCCGGCGCTGGTTCCTCACGGGACGTCCAGCTTGAAGCGGTATAAAGCTCCTCCGATGGGCCACTGCTCTGCGCTCATAAAGATGTTGCCTGGCTTTGAGAACCTGTTGTTCGCTCACTCCAGCTGGTACACATACGCTGCCACCATGCGCATCTACAAACACTGGGACTTCAGACTGAGTGAACCACACACGGCCACCGGGACTCTGTCCTTCAGCAGCTACCCTGGTTTCCTGGTGTCTCTGGATGATTTCTATCTGCTGGGCAGCGGCCTGATGATGACTCAGACCACCAATAACGTCTTCAACACCTCTCTGTACTCCTTCATCTCTCCTGCCAGCCTGTTCTCCTGGCAGAGGGTTCGACTGGCACACACGCTGGCAAAGACGGGAGAGCAGTGGGCCAAAACCTTCTCCAGATACAACTCTGGGACGTACAATAACCAGTACATGGTTGTGGACACGAGTAAAGTGAATCTGGGCAGCAGTCTGGAGGACGGAGCTCTGACGGTGGTGGAGCAGATCCCGGGGCTGGTGGAGTATTCGGATCAGACGCAGGCGCTGCGCAGAGgttACTGGCCGTCCTACAATGTGCCGTTCCACCGCAAGATCTATGATCTGAGCGGATACGAGGAGATGTGGAAGCAGTACGGCGAGGAGTTCTCATACGACCTTTGCCCTCGCGCTAAGATCTTCCGCAGCGACCAGTCGTCCGTCAGCGACCTGAACTCCCTCAAACACATCATGAGATACAACGATTATAAGAGCGACCCGTGACTTCGCAGGGCGTAC

Function

symbol description
plbd1 Predicted to enable phospholipase activity. Predicted to be involved in phospholipid catabolic process. Located in extracellular space.

NR:

description
PREDICTED: phospholipase B-like 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227073.1 True 1148 mRNA 0.55 8 1867624 1870610

Neighbor

gene id symbol gene type direction distance location
LOC122332958 NA coding upstream 137627 1728370 ~ 1729997 (+)
LOC122329718 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 139931 1711295 ~ 1727693 (+)
LOC122330144 tob2,LOC107572283,LOC107691089,LOC107745517,LOC107734722,LOC107672913,LOC107563731 coding upstream 166961 1693056 ~ 1700663 (+)
LOC122330255 pmm1,LOC107672914,LOC107691086,LOC100007686 coding upstream 180647 1680314 ~ 1686977 (+)
LOC122330554 NA coding upstream 204026 1660521 ~ 1663598 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding downstream 55137 1925747 ~ 1941793 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding downstream 132069 2002679 ~ 2010431 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding downstream 260608 2131218 ~ 2140821 (+)
LOC122341668 LOC107755616,LOC107672923 coding downstream 391000 2261610 ~ 2267508 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding downstream 396978 2267588 ~ 2270464 (+)
G16033 NA non-coding upstream 11940 1854895 ~ 1855684 (+)
LOC122330751 NA non-coding upstream 41307 1824790 ~ 1826317 (+)
G16008 NA non-coding upstream 162948 1689042 ~ 1704676 (+)
G16004 NA non-coding upstream 252095 1615160 ~ 1615529 (+)
G15944 NA non-coding upstream 376845 1485571 ~ 1490779 (+)
G16017 NA non-coding downstream 670 1871280 ~ 1891027 (+)
LOC122330717 NA non-coding downstream 72079 1942689 ~ 1943729 (+)
G16233 NA non-coding downstream 157784 2028394 ~ 2030843 (+)
G16243 LOC107755616,LOC107672923 non-coding downstream 173041 2043651 ~ 2046384 (+)
G16226 NA non-coding downstream 179575 2050185 ~ 2056000 (+)
trnar-ccu_2 NA other upstream 1839 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 2395 1619312 ~ 1865229 (+)
trnar-ccu_1 NA other upstream 216896 1650656 ~ 1650728 (+)
G16003 pick1,LOC107734822,LOC106607154 other upstream 218130 1559387 ~ 1649494 (+)
trnar-ccu plbd1,LOC107563730 other upstream 244230 1620923 ~ 1623394 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other downstream 153738 2024348 ~ 2320138 (+)
G16223 txn2,LOC107745512 other downstream 241427 2112037 ~ 2114339 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other downstream 289736 2160346 ~ 2165693 (+)
G16347 NA other downstream 697474 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 770536 2641146 ~ 2646756 (+)

Expression


Co-expression Network