LOC122330224



Basic Information


Item Value
gene id LOC122330224
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1154623 ~ 1157439 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043227078.1
CCTTTTCTCATTGGTTAAAAAGTCCCCCTCTATGTCCGTCACTGGTCAGGTCTTTCACGATCAAAGGCTTTGAGTCATGGGAACGAGCGTGGCTGTGAAGATCTCTGCTCTGCTTTGCGTTTTTCTTCTTCATGGCTCTCCGCCTGTACAAGCAGAGAAGCACTCGCTGTACTACATTTACACGGCTTTGTCCAAACCGGTCGATCTGCCGGGCATCTATCAGTTCACTGCCACGGGTCTGCTAGACGACAGACAGATCGACTATTACGACAGTCAGGAACAGAGGAAGACTCCCAAACAGACCTGGATGAAGGAGAAACTGCAGGAGGATTACTGGGTAAAAGGCACCCAGTCGAGAAAGAGCAAAGAACAGTGGTTCAATGTGAACATAGGCATCGTGATGAAACGCATGGGGCACAACGAATCAGATCTTCATGTTCTTCAGTGGAGAGTTGGCTGTGAAGCTGAGAAGCAGGGAGATGGTGTGACGTTTTCCAAAGGCGCTAGCGAGTACGGCTACGACGGGGAggattttttgtcttttgatatATTAGAGTCTCGGTGGGTCGCCTCAGTCGATGCATCTTTACCAACCAGAAGAAAATGGGACAATGTACCAATCCTAAACCAGTACACCAAAGGCTACCTGGAGAGGGAGTGCGTGGACTGGATCCAGAAATTCACAGAATACAGAGACGAGGAGCTCGGCTCCCCTCCAGAAGTTCACGCGTTCGCGAGGAAATCGACCCGAACCCGGCTGAAACTCACCTGTGCGGTCACCGGCTTCCACCCCGGAGAAGTGACGGTGATCGTTAGGAAACATCTCACACCTCTGCCTGAAGATGAATCCACAGGAATCAGACCGAACCACGACGGGACCTACCAGATGAGGAAGAGCGTGGAGATCGACAGGGACGAAGAGGCGGAATACGACTGTGTCGTGATCCACGAGAGCTCGAAAGACCCGACTATCGTCAAATGGGAAGGACTGGAGAAAACTACTCAATCGCCGACTGCCAGTGCCGCTTACGCTGGAGAACCGTCTGTTTTCGCAGGCGACGCTCCAGGCGGCCGGCCAGCTGTGTtcataatttctctctctctcatatatctTCTCATCTGGACATACTGAAGAGACGCACTCAAGGACACCTTACAGCAGGAGCGGCAAATCATTCACTTATTTCTAATACATTATAATGAAAAACAGACACATCTAACTAATTTCACTGATTTATATGTCATTTATAGACGTATTCATGCTATTTCTTTCACTAGACTgagtattattatttcttcacACTGCTAGAATCACAATCAAGTTGAATAATGTCTGCCACTCTTTAATTATCTGAATGATTAAATGACTATATTTGTAAACGTTTTGAGATCAGCCATTAAAACCTATCTAGCAACCTGTA
>XM_043227087.1
CCTTTTCTCATTGGTTAAAAAGTCCCCCTCTATGTCCGTCACTGGTCAGGTCTTTCACGATCAAAGGCTTTGAGTCATGGGAACGAGCGTGGCTGTGAAGATCTCTGCTCTGCTTTGCGTTTTTCTTCTTCATGGCTCTCCGCCTGTACAAGCAGAGAAGCACTCGCTGTACTACATTTACACGGCTTTGTCCAAACCGGTCGATCTGCCGGGCATCTATCAGTTCACTGCCACGGGTCTGCTAGACGACAGACAGATCGACTATTACGACAGTCAGGAACAGAGGAAGACTCCCAAACAGACCTGGATGAAGGAGAAACTGCAGGAGGATTACTGGGTAAAAGGCACCCAGTCGAGAAAGAGCAAAGAACAGTGGTTCAATGTGAACATAGGCATCGTGATGAAACGCATGGGGCACAACGAATCAGATCTTCATGTTCTTCAGTGGAGAGTTGGCTGTGAAGCTGAGAAGCAGGGAGATGGTGTGACGTTTTCCAAAGGCGCTAGCGAGTACGGCTACGACGGGGAggattttttgtcttttgatatATTAGAGTCTCGGTGGGTCGCCTCAGTCGATGCATCTTTACCAACCAGAAGAAAATGGGACAATGTACCAATCCTAAACCAGTACACCAAAGGCTACCTGGAGAGGGAGTGCGTGGACTGGATCCAGAAATTCACAGAATACAGAGACGAGGAGCTCGGCTCCCCTCCAGAAGTTCACGCGTTCGCGAGGAAATCGACCCGAACCCGGCTGAAACTCACCTGTGCGGTCACCGGCTTCCACCCCGGAGAAGTGACGGTGATCGTTAGGAAACATCTCACACCTCTGCCTGAAGATGAATCCACAGGAATCAGACCGAACCACGACGGGACCTACCAGATGAGGAAGAGCGTGGAGATCGACAGGGACGAAGAGGCGGAATACGACTGTGTCGTGATCCACGAGAGCTCGAAAGACCCGACTATCGTCAAATGGGGACTGGAGAAAACTACTCAATCGCCGACTGCCAGTGCCGCTTACGCTGGAGAACCGTCTGTTTTCGCAGGCGACGCTCCAGGCGGCCGGCCAGCTGTGTtcataatttctctctctctcatatatctTCTCATCTGGACATACTGAAGAGACGCACTCAAGGACACCTTACAGCAGGAGCGGCAAATCATTCACTTATTTCTAATACATTATAATGAAAAACAGACACATCTAACTAATTTCACTGATTTATATGTCATTTATAGACGTATTCATGCTATTTCTTTCACTAGACTgagtattattatttcttcacACTGCTAGAATCACAATCAAGTTGAATAATGTCTGCCACTCTTTAATTATCTGAATGATTAAATGACTATATTTGTAAACGTTTTGAGATCAGCCATTAAAACCTATCTAGCAACCTGTA
>XM_043227097.1
CCTTTTCTCATTGGTTAAAAAGTCCCCCTCTATGTCCGTCACTGGTCAGGTCTTTCACGATCAAAGGCTTTGAGTCATGGGAACGAGCGTGGCTGTGAAGATCTCTGCTCTGCTTTGCGTTTTTCTTCTTCATGGCTCTCCGCCTGTACAAGCAGAGAAGCACTCGCTGTACTACATTTACACGGCTTTGTCCAAACCGGTCGATCTGCCGGGCATCTATCAGTTCACTGCCACGGGTCTGCTAGACGACAGACAGATCGACTATTACGACAGTCAGGAACAGAGGAAGACTCCCAAACAGACCTGGATGAAGGAGAAACTGCAGGAGGATTACTGGGTAAAAGGCACCCAGTCGAGAAAGAGCAAAGAACAGTGGTTCAATGTGAACATAGGCATCGTGATGAAACGCATGGGGCACAACGAATCAGATCTTCATGTTCTTCAGTGGAGAGTTGGCTGTGAAGCTGAGAAGCAGGGAGATGGTGTGACGTTTTCCAAAGGCGCTAGCGAGTACGGCTACGACGGGGAggattttttgtcttttgatatATTAGAGTCTCGGTGGGTCGCCTCAGTCGATGCATCTTTACCAACCAGAAGAAAATGGGACAATGTACCAATCCTAAACCAGTACACCAAAGGCTACCTGGAGAGGGAGTGCGTGGACTGGATCCAGAAATTCACAGAATACAGAGACGAGGAGCTCGGCTCCCCTCCAGAAGTTCACGCGTTCGCGAGGAAATCGACCCGAACCCGGCTGAAACTCACCTGTGCGGTCACCGGCTTCCACCCCGGAGAAGTGACGGTGATCGTTAGGAAACATCTCACACCTCTGCCTGAAGATGAATCCACAGGAATCAGACCGAACCACGACGGGACCTACCAGATGAGGAAGAGCGTGGAGATCGACAGGGACGAAGAGGCGGAATACGACTGTGTCGTGATCCACGAGAGCTCGAAAGACCCGACTATCGTCAAATGGGAAGGACTGGAGAAAACTACTCAATCGCCGACTGCCAGTGCCGCTTACGCTGGAGAACCGTCTGGCGACGCTCCAGGCGGCCGGCCAGCTGTGTtcataatttctctctctctcatatatctTCTCATCTGGACATACTGAAGAGACGCACTCAAGGACACCTTACAGCAGGAGCGGCAAATCATTCACTTATTTCTAATACATTATAATGAAAAACAGACACATCTAACTAATTTCACTGATTTATATGTCATTTATAGACGTATTCATGCTATTTCTTTCACTAGACTgagtattattatttcttcacACTGCTAGAATCACAATCAAGTTGAATAATGTCTGCCACTCTTTAATTATCTGAATGATTAAATGACTATATTTGTAAACGTTTTGAGATCAGCCATTAAAACCTATCTAGCAACCTGTA
>XM_043227104.1
CCTTTTCTCATTGGTTAAAAAGTCCCCCTCTATGTCCGTCACTGGTCAGGTCTTTCACGATCAAAGGCTTTGAGTCATGGGAACGAGCGTGGCTGTGAAGATCTCTGCTCTGCTTTGCGTTTTTCTTCTTCATGGCTCTCCGCCTGTACAAGCAGAGAAGCACTCGCTGTACTACATTTACACGGCTTTGTCCAAACCGGTCGATCTGCCGGGCATCTATCAGTTCACTGCCACGGGTCTGCTAGACGACAGACAGATCGACTATTACGACAGTCAGGAACAGAGGAAGACTCCCAAACAGACCTGGATGAAGGAGAAACTGCAGGAGGATTACTGGGTAAAAGGCACCCAGTCGAGAAAGAGCAAAGAACAGTGGTTCAATGTGAACATAGGCATCGTGATGAAACGCATGGGGCACAACGAATCAGATCTTCATGTTCTTCAGTGGAGAGTTGGCTGTGAAGCTGAGAAGCAGGGAGATGGTGTGACGTTTTCCAAAGGCGCTAGCGAGTACGGCTACGACGGGGAggattttttgtcttttgatatATTAGAGTCTCGGTGGGTCGCCTCAGTCGATGCATCTTTACCAACCAGAAGAAAATGGGACAATGTACCAATCCTAAACCAGTACACCAAAGGCTACCTGGAGAGGGAGTGCGTGGACTGGATCCAGAAATTCACAGAATACAGAGACGAGGAGCTCGGCTCCCCTCCAGAAGTTCACGCGTTCGCGAGGAAATCGACCCGAACCCGGCTGAAACTCACCTGTGCGGTCACCGGCTTCCACCCCGGAGAAGTGACGGTGATCGTTAGGAAACATCTCACACCTCTGCCTGAAGATGAATCCACAGGAATCAGACCGAACCACGACGGGACCTACCAGATGAGGAAGAGCGTGGAGATCGACAGGGACGAAGAGGCGGAATACGACTGTGTCGTGATCCACGAGAGCTCGAAAGACCCGACTATCGTCAAATGGGGACTGGAGAAAACTACTCAATCGCCGACTGCCAGTGCCGCTTACGCTGGAGAACCGTCTGGCGACGCTCCAGGCGGCCGGCCAGCTGTGTtcataatttctctctctctcatatatctTCTCATCTGGACATACTGAAGAGACGCACTCAAGGACACCTTACAGCAGGAGCGGCAAATCATTCACTTATTTCTAATACATTATAATGAAAAACAGACACATCTAACTAATTTCACTGATTTATATGTCATTTATAGACGTATTCATGCTATTTCTTTCACTAGACTgagtattattatttcttcacACTGCTAGAATCACAATCAAGTTGAATAATGTCTGCCACTCTTTAATTATCTGAATGATTAAATGACTATATTTGTAAACGTTTTGAGATCAGCCATTAAAACCTATCTAGCAACCTGTA

Function


GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process
GO:0001775 cell activation biological_process
GO:0002376 immune system process biological_process
GO:0045321 leukocyte activation biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043227078.1 True 1421 mRNA 0.48 6 1154623 1157439
XM_043227087.1 False 1418 mRNA 0.48 6 1154623 1157439
XM_043227097.1 False 1412 mRNA 0.48 6 1154623 1157439
XM_043227104.1 False 1409 mRNA 0.48 6 1154623 1157439
Loading

Neighbor


gene id symbol gene type direction distance location
LOC122330518 NA coding upstream 49444 1102861 ~ 1105179 (+)
LOC122330159 NA coding upstream 52523 1090492 ~ 1102100 (+)
LOC122329984 NA coding upstream 64990 1085289 ~ 1089633 (+)
LOC122330011 NA coding upstream 69734 1078933 ~ 1084889 (+)
LOC122330262 LOC107561206,LOC107727046,LOC107679474 coding upstream 90299 1062276 ~ 1064324 (+)
LOC122329844 LOC107563756,LOC107731666 coding downstream 2798 1160237 ~ 1176071 (+)
LOC122330304 LOC107561208,LOC107727047,LOC107679470 coding downstream 18793 1176232 ~ 1179341 (+)
kcnj4 kcnj4,LOC107711802,LOC107679476,LOC107727044 coding downstream 30579 1188018 ~ 1198038 (+)
sox10 sox10,LOC107674484,LOC107711804,LOC107563722,LOC107727045,LOC107679477 coding downstream 60082 1217521 ~ 1224917 (+)
LOC122329817 LOC100537134 coding downstream 72562 1230001 ~ 1234904 (+)
G15911 NA non-coding upstream 1395 1152825 ~ 1153228 (+)
G15886 NA non-coding upstream 20831 1120640 ~ 1133792 (+)
G15887 NA non-coding upstream 23148 1129892 ~ 1131475 (+)
G15889 NA non-coding upstream 31323 1121340 ~ 1123300 (+)
G15883 NA non-coding upstream 36957 1117223 ~ 1117666 (+)
G15925 NA non-coding downstream 55886 1213325 ~ 1213628 (+)
G15927 NA non-coding downstream 57877 1215316 ~ 1215605 (+)
G15929 NA non-coding downstream 82907 1240346 ~ 1241047 (+)
LOC122330723 NA non-coding downstream 121824 1279263 ~ 1281171 (+)
LOC122330682 NA non-coding downstream 225809 1383248 ~ 1384894 (+)
LOC122330066 NA other upstream 103472 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 145192 1005983 ~ 1009431 (+)
LOC122330463 NA other upstream 379089 754430 ~ 775534 (+)
LOC122330407 NA other upstream 518384 625364 ~ 636239 (+)
G15563 NA other upstream 597542 553698 ~ 557081 (+)
G15939 NA other downstream 133530 1290969 ~ 1291564 (+)
G15955 NA other downstream 233300 1390739 ~ 1392850 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other downstream 238408 1395847 ~ 1408926 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 401948 1559387 ~ 1649494 (+)
G16002 pick1,LOC107734822,LOC107734770 other downstream 461873 1619312 ~ 1865229 (+)

Expression


LOC122330224 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC122330224 Expression in each Bioproject

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LOC122330224 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network