LOC122330463


Basic Information

Item Value
gene id LOC122330463
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 754430 ~ 775534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227493.1
CGACCAGAAAAACAGCACAAGGATTATCACAAAAGAGCTCATTTCTTAAACAAGAACATTACAGATGGAAACTTCTCCCTCCGGCTGAAAAACCTGAGAACTGAAGATGAAGGGGTTACACATGTAACGTTTACAGCGaccaggagtgtgtgtgttcagtcagAAAAGAGCTGAAACTGaGATTCTCTGTGAAACCTTCGCATTACATGACCGTTCCTCTTGGATCTTCAGTGGTTTTGCCCTGTTATCATAATAAACCCTCTGGAACGAGCAATCTGAAGGTGGAGTGGAGAAGAAACGAGTCTTTAGTTCATCTGTATCAGGACGGAGAGAGTCGAGCAGAAGCCCAGCAGCAGGATTATCAGGACAGAGCTCATTTCTTCACTGATCAGATTCAACATGGAAacttctctctccttctttatGATCTGAGATCTGAAGATGAGGGACAGTACACATGTACAGTTCACACTGGCTCTTTCTGGAGTCGCTGTTCAACTAATATAAACTTGGTACTGAAACTATTGGAACCAGTCTTCCGTCTTCAGATGTTTCTGGTCTTCTGTCCAAATGTTCTGATGTTTCTGGCGTTTGTTTTCTGGGGTGTTTCTGAAGggtCTGTGAGTGAGTCGGTCTGTTGTTGCGCTCTTTATTTTCTGAGGCCTCTCCTGCTGCTCTGGACGGCTCcgtatatttttcatttcacagGCACAGTTAAAACATTGATTCTGAACTACAGTTATGTGGCAGAATATGTTGTTGTCTTACTTGTTGTGTATTCAGACATCATACGAGCAGCACAAAGGTCATCAGGAGCAGACTGAAAACAGAACAgtctcagaaacacacagactgtcgttaaaaatacagtactCTCTCTTCACAAGTGCTTGGCAAAGCTTCTGAGCTACGCTGAGTTTGACAGAGCCGTGATCATCGCCCTGTTTGTGTTGGTGTTTGTGTTCTGCCTCTGCAAAGCCTTTTACATTTTAGCGACAGAGGTCTGGAAGAAAACCGGACAGGCACTTAAGATCTTTAATCTCGTGGCTGATATGATCTTTCAGATTCTGCCAACTTTACagttcatcctcctcttctacACGTTTGGATCGACCAGAGGAGGAttcatcataattattattgtaccACTGTTAATGCTGATGATGAATGACGCATGGCTTAAAAGATGCTATTATAGACTGGGCTTTTCACTTTCAGTTGTGAAGACAGTGATGATCATCTTCATATTGGTGACTAATGCAGTGATGATCGTTCTTTACATATTCACTCTGGACTATCAAACAGATGCGATTGGATGGGGCTGTGTTGTGATGTTTCTGCAGGTTCGCTGGACGCTCATGTTCTTCACAGATTATATTTATGGTTTTCTCAGATTGTCTCAAGGTTTTCAGCGTTATGTTGCTGTGTATGTGTTTGGATCAGTTGTTGTAGTTTTACTGAACTCTGCATTAATAACAGAAATGATCCTGAAATCAGcgTCTGGAGGCCGTGTGATGGCTGATCTCAGAttcattgtgtttctgtctgaGTGTTTATTTGCTGTATCTCTGATGATTTCTGCGTTCTTAGGATCCAAGATCACAGACTGTCTGAAGTCTTGTCAGGAGAAAGCGAGACCGAGACGAGTCAAAAGATCCCAGAAGAACCAGAACTCAGAAGAAGAGAGATTTCTCTGAAGACTGTAGATGCAGCGCTGTCTCAAACATGATAAAGAAACTATTACAGAGTGATCCTGAACACGTTAAAGCTGCTTTCAGTCAACGGATGGATTGTGAGCAGCAcctaacaaactaaaatatgtcCATCAGATCTGCACTGATCCACTGACGTGTTTTTTGGAAAtagctgtaaatatatattttgtatatatgtgtgtaaaatcttttttaaagacTGATTCTAGTAATACACATATTAAAATCTGTAATGGCCGATCTCAGA
>XM_043227501.1
CGACCAGAAAAACAGCACAAGGATTATCACAAAAGAGCTCATTTCTTAAACAAGAACATTACAGATGGAAACTTCTCCCTCCGGCTGAAAAACCTGAGAACTGAAGATGAAGGGGTTACACATGTAACGTTTACAGCGaccaggagtgtgtgtgttcagtcagAAAAGAGCTGAAACTGaGATTCTCTGTGAAACCTTCGCATTACATGACCGTTCCTCTTGGATCTTCAGTGGTTTTGCCCTGTTATCATAATAAACCCTCTGGAACGAGCAATCTGAAGGTGGAGTGGAGAAGAAACGAGTCTTTAGTTCATCTGTATCAGGACGGAGAGAGTCGAGCAGAAGCCCAGCAGCAGGATTATCAGGACAGAGCTCATTTCTTCACTGATCAGATTCAACATGGAAacttctctctccttctttatGATCTGAGATCTGAAGATGAGGGACAGTACACATGTACAGTTCACACTGGCTCTTTCTGGAGTCGCTGTTCAACTAATATAAACTTGGTACTGAAACTATTGGAACCAGTCTTCCGTCTTCAGATGTTTCTGGTCTTCTGTCCAAATGTTCTGATGTTTCTGGCGTTTGTTTTCTGGGGTGTTTCTGAAGggtCTGTGAGTGAGTCGGTCTGTTGTTGCGCTCTTTATTTTCTGAGGCCTCTCCTGCTGCTCTGGACGGCTCcgtatatttttcatttcacagGCACAGTTAAAACATTGATTCTGAACTACAGTTATGTGGCAGAATATGTTGTTGTCTTACTTGTTGTGTATTCAGACATCATACGAGCAGCACAAAGGTCATCAGGAGCAGACTGAAAACAGAACAgtctcagaaacacacagactgtcgttaaaaatacagtactCTCTCTTCACAAGTGCTTGGCAAAGCTTCTGAGCTACGCTGAGTTTGACAGAGCCGTGATCATCGCCCTGTTTGTGTTGGTGTTTGTGTTCTGCCTCTGCAAAGCCTTTTACATTTTAGCGACAGAGGTCTGGAAGAAAACCGGACAGGCACTTAAGATCTTTAATCTCGTGGCTGATATGATCTTTCAGATTCTGCCAACTTTACagttcatcctcctcttctacACGTTTGGATCGACCAGAGGAGGAttcatcataattattattgtaccACTGTTAATGCTGATGATGAATGACGCATGGCTTAAAAGATGCTATTATAGACTGGGCTTTTCACTTTCAGTTGTGAAGACAGTGATGATCATCTTCATATTGGTGACTAATGCAGTGATGATCGTTCTTTACATATTCACTCTGGACTATCAAACAGATGCGATTGGATGGGGCTGTGTTGTGATGTTTCTGCAGGTTCGCTGGACGCTCATGTTCTTCACAGATTATATTTATGGTTTTCTCAGATTGTCTCAAGGTTTTCAGCGTTATGTTGCTGTGTATGTGTTTGGATCAGTTGTTGTAGTTTTACTGAACTCTGCATTAATAACAGAAATGATCCTGAAATCAGcgTCTGGAGGCCGTGTGATGGCTGATCTCAGAttcattgtgtttctgtctgaGTGTTTATTTGCTGTATCTCTGATGATTTCTGCGTTCTTAGGATCCAAGATCACAGACTGTCTGAAGTCTTGTCAGAAAGCGAGACCGAGACGAGTCAAAAGATCCCAGAAGAACCAGAACTCAGAAGAAGAGAGATTTCTCTGAAGACTGTAGATGCAGCGCTGTCTCAAACATGATAAAGAAACTATTACAGAGTGATCCTGAACACGTTAAAGCTGCTTTCAGTCAACGGATGGATTGTGAGCAGCAcctaacaaactaaaatatgtcCATCAGATCTGCACTGATCCACTGACGTGTTTTTTGGAAAtagctgtaaatatatattttgtatatatgtgtgtaaaatcttttttaaagacTGATTCTAGTAATACACATATTAAAATCTGTAATGGCCGATCTCAGA
>XR_006248020.1
GACCAGAAAAACAGCACAAGGATTATCACAAAAGAGCTCATTTCTTAAACAAGAACATTACAGATGGAAACTTCTCCCTCCGGCTGAAAAACCTGAGAACTGAAGATGAAGGGGTTACACATGTAACGTTTACAGCGaccaggagtgtgtgtgttcagtcagAAAAGAGCTGAAACTGaGATTCTCTGTGAAACCTTCGCATTACATGACCGTTCCTCTTGGATCTTCAGTGGTTTTGCCCTGTTATCATAATAAACCCTCTGGAACGAGCAATCTGAAGGTGGAGTGGAGAAGAAACGAGTCTTTAGTTCATCTGTATCAGGACGGAGAGAGTCGAGCAGAAGCCCAGCAGCAGGATTATCAGGACAGAGCTCATTTCTTCACTGATCAGATTCAACATGGAAacttctctctccttctttatGATCTGAGATCTGAAGATGAGGGACAGTACACATGTACAGTTCACACTGGCTCTTTCTGGAGTCGCTGTTCAACTAATATAAACTTGGTACTGAAACTATTGGAACCAGTCTTCCGTCTTCAGATGTTTCTGGTCTTCTGTCCAAATGTTCTGATGTTTCTGGCGTTTGTTTTCTGGGGTGTTTCTGAAGggtCTGTGAGTGAGTCGGTCTGTTGTTGCGCTCTTTATTTTCTGAGGCCTCTCCTGCTGCTCTGGACGGCTCcgtatatttttcatttcacagGCACAGTTAAAACATTGATTCTGAACTACAGTTATGTGGCAGAATATGTTGTTGTCTTACTTGTTGTGTATTCAGCTCTCTTCACAAGTGCTTGGCAAAGCTTCTGAGCTACGCTGAGTTTGACAGAGCCGTGATCATCGCCCTGTTTGTGTTGGTGTTTGTGTTCTGCCTCTGCAAAGCCTTTTACATTTTAGCGACAGAGGTCTG

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03070 Bacterial secretion system

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227493.1 True 1962 mRNA 0.42 15 754430 775534
XM_043227501.1 False 1959 mRNA 0.42 15 754430 775534
XR_006248020.1 False 914 transcript 0.44 7 754431 768972

Neighbor

gene id symbol gene type direction distance location
LOC122330397 NA coding upstream 717 743953 ~ 753713 (+)
LOC122329668 NA coding upstream 43029 699715 ~ 711401 (+)
LOC122332267 NA coding upstream 115131 638828 ~ 639299 (+)
LOC122329695 LOC107574151,LOC107661760,LOC107705958,LOC107574149,LOC107712638,LOC107575271 coding upstream 144069 571938 ~ 610361 (+)
LOC122332242 NA coding upstream 182477 569324 ~ 571953 (+)
LOC122332312 NA coding downstream 7876 783410 ~ 792668 (+)
LOC122330100 NA coding downstream 69069 844603 ~ 846445 (+)
LOC122330251 NA coding downstream 235777 1011311 ~ 1013643 (+)
LOC122332569 NA coding downstream 242173 1017707 ~ 1019352 (+)
LOC122332610 NA coding downstream 259718 1035252 ~ 1045858 (+)
LOC122330711 NA non-coding upstream 56721 695751 ~ 697709 (+)
G15586 NA non-coding upstream 76335 677066 ~ 678095 (+)
G15550 si:ch211-108d22.2 non-coding upstream 231758 520750 ~ 522672 (+)
G15546 NA non-coding upstream 274130 478439 ~ 480300 (+)
LOC122330779 NA non-coding upstream 297764 454766 ~ 456666 (+)
LOC122330767 NA non-coding downstream 6449 781983 ~ 783076 (+)
LOC122330666 NA non-coding downstream 17716 793250 ~ 815075 (+)
G15592 NA non-coding downstream 41955 817489 ~ 893665 (+)
G15601 LOC107574600 non-coding downstream 56725 832259 ~ 837762 (+)
LOC122330703 NA non-coding downstream 71753 847287 ~ 849709 (+)
LOC122330407 NA other upstream 118191 625364 ~ 636239 (+)
G15563 NA other upstream 197349 553698 ~ 557081 (+)
LOC122331567 NA other upstream 444521 73544 ~ 309909 (+)
LOC122330774 NA other upstream 455109 55175 ~ 299321 (+)
LOC122330135 NA other downstream 230449 1005983 ~ 1009431 (+)
LOC122330066 NA other downstream 271478 1047012 ~ 1051151 (+)
G15939 NA other downstream 515435 1290969 ~ 1291564 (+)
G15955 NA other downstream 615205 1390739 ~ 1392850 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other downstream 620313 1395847 ~ 1408926 (+)

Expression


Co-expression Network