LOC122330593 (polr2f,LOC107727050)


Basic Information

Item Value
gene id LOC122330593
gene name polr2f,LOC107727050
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1415617 ~ 1418312 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227748.1
TCTCCACGGACCCTAAAAACCGCGGCACGCCGGAAGTTGGTTCCATGCTTCGCCTCGTCTGGTGTCCGAGGCGCCACAACAACGGAGTTTTCTGCGAAATCGTTACTTAAATCGTTCTTACGACGCGCTAGACAATAACAATGTCTGACAACGAAGACAATTTCGATGACGGAGATTTCGATGATGTCGAGGATGAAGAGCCTCTGGATGACCTGGAGAACGTGGAAGATgaggACCAGGAGAACGTCCAGATCCTGCCGGCGGGTGAAGGACagcaggccaatcagaagagaatCACTACTCCTTACATGACTAAGTACGAGCGTGCGCGGGTGCTGGGAACACGAGCGCTGCAGATCGCGATGTGTGCGCCGGTGATGGTGGAGCTGGAAGGAGAGACGGATCCGCTGCAGATCGCCATGAAAGAGCTCAAGAGCAGGAAGATCCCCATCATCATCCGCCGGTATCTGCCTGATGGGAGTTATGAGGACTGGGGCTGTGACGAGCTCATAATTACTgactgagacacacactcacacacactcacacacactcacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatctctaGAGCTTTGTTTCATCCAGTAGTTCATGTGTTTGTCCGCAGGAGGGCAGCAGAAACACAGCACAAACTTCTTCACTcagtttcattatttaatgttcatttctttgttttatccATGCgatattaaaactgtttttttgtagAAAGGTA

Function

symbol description
polr2f Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2F (RNA polymerase II, I and III subunit F).

NR:

description
DNA-directed RNA polymerases I, II, and III subunit RPABC2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03014 RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227748.1 True 804 mRNA 0.50 5 1415617 1418312

Neighbor

gene id symbol gene type direction distance location
LOC122330340 NA coding upstream 25918 1387484 ~ 1389699 (+)
LOC122329966 NA coding upstream 35591 1376449 ~ 1380026 (+)
LOC122332730 NA coding upstream 41327 1372532 ~ 1374290 (+)
LOC122329817 LOC100537134 coding upstream 180713 1230001 ~ 1234904 (+)
sox10 sox10,LOC107674484,LOC107711804,LOC107563722,LOC107727045,LOC107679477 coding upstream 190700 1217521 ~ 1224917 (+)
LOC122330185 micall1,LOC107727039,LOC107674481,LOC107711806,LOC107563760 coding downstream 31926 1450238 ~ 1453084 (+)
LOC122329871 NA coding downstream 38638 1456950 ~ 1463253 (+)
LOC122329679 NA coding downstream 90181 1508493 ~ 1516411 (+)
LOC122329687 NA coding downstream 99196 1517508 ~ 1525476 (+)
cdc42ep1b LOC107579628,LOC107711548,LOC107711549 coding downstream 140039 1558351 ~ 1565942 (+)
G15967 NA non-coding upstream 418 1414215 ~ 1415199 (+)
LOC122330682 NA non-coding upstream 30723 1383248 ~ 1384894 (+)
LOC122330723 NA non-coding upstream 134446 1279263 ~ 1281171 (+)
G15929 NA non-coding upstream 174570 1240346 ~ 1241047 (+)
G15927 NA non-coding upstream 200012 1215316 ~ 1215605 (+)
G15972 NA non-coding downstream 22947 1441259 ~ 1441742 (+)
G15944 NA non-coding downstream 67259 1485571 ~ 1490779 (+)
G16004 NA non-coding downstream 196848 1615160 ~ 1615529 (+)
G16008 NA non-coding downstream 270730 1689042 ~ 1704676 (+)
G16027 LOC107691092,LOC107572810,LOC107722836 non-coding downstream 352445 1770757 ~ 1979709 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other upstream 6691 1395847 ~ 1408926 (+)
G15955 NA other upstream 22767 1390739 ~ 1392850 (+)
G15939 NA other upstream 124053 1290969 ~ 1291564 (+)
LOC122330066 NA other upstream 364466 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 406186 1005983 ~ 1009431 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 141075 1559387 ~ 1649494 (+)
G16002 pick1,LOC107734822,LOC107734770 other downstream 201000 1619312 ~ 1865229 (+)
trnar-ccu plbd1,LOC107563730 other downstream 202611 1620923 ~ 1623394 (+)
trnar-ccu_1 NA other downstream 232344 1650656 ~ 1650728 (+)
trnar-ccu_2 NA other downstream 447401 1865713 ~ 1865785 (+)

Expression


Co-expression Network