sstr3 (sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886)


Basic Information

Item Value
gene id sstr3
gene name sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10645904 ~ 10661084 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228158.1
GTACTCAGTGAGAGTGTTTTCTTGCGCATGCATTATGTGGTCCTCTTCAGTGAAAAAATCCTTTTATCTTTAGTGAAAAATTTGCAGTGAAAATCCTTTTATCTTTAACCTCTTCAGTGGATCATTCGTTCCATTAACTGTCTAAAGACTCTCTTAAACTCAAGCGGCTGACAGCTGACCTAGGCATCACGGATCCgtctttttttacctttatagCTGATTATCTACATCAAACATTACACCTTGTGTATTCAAGAAGATATTCAAAGTTATAAGGGAGTTCTAAGGAACTTCATATGGCAAATTAAACATATAATTGTCGTCTAGTTtagttaaaaactaaaatacacttAAACTTAGACTAGTAGACAAAAGTGAGAACGTtttgtcaagtcaagtcaaaaGCAACTTTTCcatcaatatttaaatgtgagcaaataaaaatctgttacCGTTTTCCAATTAAATCCATATCCTGCTAAAGCAAATGAAATCTAATATCACAAATAAGTTCAAATAGGTTTTACACATACTGTTTTCatgttcaaaaatgtaatacaaatttGGCTTTTTCTCTTTATCTAGTAATAGCAATCAATTGTGTTTCTGTGATGCTTGCATGATCAAAATATGACAGTTATGGttaatattgtattgtaataaGAATGTAATAATCATTCTATTCAAAACGGTTCAAATCTCTTTCAAATTCAAAGCAGTAACAAAGTTTACTTAAACCTTGGTCTGTCAAACAAAATGTCAGTCGTATAATAATAACCtgagtgaaatatatatattgcttctCATTCCTTCCCAGCAGTCTTGCGCCCTAAAGAACACGCCGTGCACTTACAGCTCAATCAACAACAGACCTCTAAAACGCACGCGTGCACGCGCGCACGAGCTGACGGTACCGGAGTGATTTCTATCACGCCTACCTTCCCCTGGCGTGTGCCTGCGGAAGAGCCGTTACCTGGTTACAGGGGAGTGATGGAGCATTGAGCAATGCAATCTTCAGGACTCCTCAGATATGAGAGTTTCTCTCGCGTTCGCCGAGTCAAAGCACCGCGCGCTGTTTCTGCGGCGCCTCCAGAGAGCGCGTGCGACGGCTCGTTCAGGGAAAAAAACGCTCGAACCTCCGAATTAAGTTAGAAGTATCGCCACGTATCTCCGGGTTTGTCATATTCCCAGCTGCGACGAGCAAGTTGGGCGGCAGAATATTGGTTTAAGGACAATGGCCCCCAGCTGAAGGCAGTGACGGCAAGAGACTGAGATGGAGCTGACCTCAGTAGACGCCTCTGCTGTGCTGGGCTTATGGGGCAACGGCTCCATTCCTGGTTTCCTTCTTAACGAGAGCATTCTCAATGACACTTGCTTTCTCAATGCTTCGAACTGCACTAATGGGACAGATGCGGGGAACCGAGCAGGAACAAGCATGGCAGGAATCCTCATCCCGCTCATTTACATCATCGTCTGCATCGTCGGCCTGGGGGGAAACTCACTGGTCATCCACATAGTCCTGCATTACTCCAAGACAGAGTCAGTGACCAACATCTACATCCTGAATCTAGCTATAGCCGATGAGCTCTTCATGCTGGGCCTTCCGTTCCTCGCCGTGCAGAACGCCATGCACTCCTGGCCCTTCGGCTCATTCACGTGCAGGTTGGTCATGACCGTTGACGGCATTAACCAGTTCACCAGCATCTTCTGCCTCACTGTGATGAGCATCGATCGCTACCTGGCCGTGGTTCATCCTATACGGTCCTCAAAATGGAGACGACCGCAAGTGGCCAAGGCAGTGAACGGAACAATCTGGGCGGTCTCGTTTTTAGTAGTCTTGCCGGTGGTGATTTTCGCAAACGTGCAACGGGAAGGAGGCATCTGCAACATCATATGGCCGGAGCCAGCTAACATCTGGGGTGCAGCATTTATCATCTACACTTCCACAGTTGGCTTTTTCTTTCCCTTGCTAGTCATCTGCATGTGCTATCTCCTCATCGTGATCAAAATCCGCAGCTCGGGAAAAAAGGTTCATGCCACTTCGACCAAACGGCGCAAGTCAGAGCGCAAAGTCACACGAATGGTGGTGATAGTTGTGGCTGTGTTCGTTTTCTGCTGGATGCCGTTTTATGCCCTCAACATCATTAACCTGGTGGAGTCGCTACGGGATGAGCCCCAAGGTCTGCATCTTTTTGTGGTGGTGTTGTCTTACGCTAACAGCTGCGCTAACCCTATCGTTTACGGCTTCCTTTCGGACAACTTCAAAAGAGGATTTGGAAAGGCTCTGTGCCGCTCATCTCGAAGAGTCGAGAACCACGAGCCAACCGAGCAGCAGCATCAGGAGGAACGAAGAAGAGTTCTGATGCCCAGGGAAAGCCTTAGAAGAGCAGTGAGagatgaagaggatgaggaagaagaagagTACAGGGAGGAAGTGACGGAGATGACGGAAATCTGCAGGATTACTCAGAACGGAAATGGAAGTGGACAACCTGAAAGCACCAGAGCGCTTTTCTTAGAGAGACCCTCGGGTACTGGGGTTTCTGAGACATGTTCCCCAGACAGGAGAGGCATGAGTGGGGATGTTAAAGGCACAGGCTTTGGAACTGCTGCAACCCTGCTGAACGGGGCTAAAAATGGGAATGTGAAAACACTGCCAGAAGAAccagtggaaaaaaacaactcacTGGAGATCAGCTACTTGTAAAGTTTTGTGTCAGCTggaaaaacagtattattgtaCATGCCTCTCTGAGCTCTATTCACTCTGTAGTTACAGTACTGCCTTTCCTGAAGTCTATCAGCTCACCTTCATGTCTGTGAAATTTCCTCCTGGTTATTAGACTTTGTCGTTTGAAAGTGTACAATCTGGCAACACAATTTGAAAAGTCACAATGAATTTTGCCTTATTTATAGGATACTTGGCAAGTCAAAGCAAGGGTCATCAGCAGCATTCAATGGTATCAATACCTATGGGACCAGCACCACAATATGTGAAGCATCTATGTGCCTTTTTCTAAATTTGTTTAGTAGATTTGATCaatgcattgattttatggCTACGACTGGGCACTAGATCACCAAGTACATTTACATGCTCTTTTGCTTGCGCATGTGAACATACTTAGTGAGACTTGTAGCATACTACTAGGTGGTAAAATTTGGAgaagatttttttgtacatgttAACAGGTCAATAATTATACATCGGCTTGTAGTTTtctctaaatgtatttgtatgtgcTTTTTGCCTTAATTGTAAAAGTATTGTACACTAATTGAATTATGTTGCAAACAGGTCTTCAAAGTCATACATggatattgttatattatatagttatgTGCTGCCTA

Function

symbol description
sstr3 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SSTR3 (somatostatin receptor 3).

NR:

description
somatostatin receptor type 5-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0038170 somatostatin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004994 somatostatin receptor activity molecular_function

KEGG:

id description
K04221 SSTR5; somatostatin receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228158.1 True 3351 mRNA 0.44 2 10645904 10661084

Neighbor

gene id symbol gene type direction distance location
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding upstream 7308 10626162 ~ 10638596 (+)
fam83fa fam83fa,LOC107690234,LOC107551173,LOC107732892,LOC107561349,LOC107680871,LOC107733829 coding upstream 28323 10607636 ~ 10617581 (+)
grap2a grap2a,LOC107690235,LOC107680873,LOC107561352,LOC107732893,LOC107733828,LOC107551143 coding upstream 38395 10595644 ~ 10607509 (+)
cacna1ia LOC107690236,LOC107733827,LOC107561340,LOC107680839 coding upstream 74677 10422746 ~ 10571227 (+)
LOC122341728 lgals2a,LOC107690239,LOC107733834,LOC107568668,LOC107680883,LOC107568169 coding upstream 244859 10397843 ~ 10401045 (+)
eif3d eif3d,LOC107732884,LOC107690232,LOC107680878 coding downstream 11439 10672523 ~ 10678681 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding downstream 50243 10711327 ~ 10769397 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding downstream 156646 10817730 ~ 10820947 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding downstream 213153 10874237 ~ 10885623 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding downstream 287594 10948678 ~ 10954729 (+)
G18757 NA non-coding upstream 6611 10639089 ~ 10639293 (+)
G18747 NA non-coding upstream 56085 10589522 ~ 10589819 (+)
G18744 NA non-coding upstream 66760 10571819 ~ 10579144 (+)
G18671 NA non-coding upstream 343854 10273974 ~ 10302050 (+)
G18517 NA non-coding upstream 702751 9865786 ~ 9943153 (+)
G18763 NA non-coding downstream 2162 10663246 ~ 10664532 (+)
G18792 NA non-coding downstream 39193 10700277 ~ 10700619 (+)
G18790 si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107680847,LOC107732904 non-coding downstream 39703 10700787 ~ 10701636 (+)
G18794 NA non-coding downstream 41210 10702294 ~ 10702806 (+)
G18807 NA non-coding downstream 126271 10787355 ~ 10789666 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 542443 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 846108 9798815 ~ 9799796 (+)
G18491 NA other upstream 896024 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 947989 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 1460244 9184399 ~ 9185660 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 30806 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 91675 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 672657 11333741 ~ 11335825 (+)
G18949 NA other downstream 707809 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 1112116 11773200 ~ 11833924 (+)

Expression


Co-expression Network