nptx2a (nptx2a,LOC107665931,LOC107724745,LOC107713953,LOC107691222)


Basic Information

Item Value
gene id nptx2a
gene name nptx2a,LOC107665931,LOC107724745,LOC107713953,LOC107691222
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26364279 ~ 26378411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228175.1
TCCGCGCGCTTCTCCAGCGGAACCAAACCGCGCGCGCCTCGCTCTCTATATTAATCGGGTGAAGCGCCGCTGTCCGTTCAGCACCGCTGACTGTGTGAAGAGAATTAAAGAGCTGACAGTCGGCTTCGTTTGGACAGCTACTTGTTTGTGAGTGATTTTGCTCAAGTGACAGGGAGTTAAATGCGTTTGACGCGTCTGTGAGAAGGACTCCAACAGTTTGTTTGGCATACTCGGTGATTGCGCGAAGAGAGCGGCGCTCGGGCTGTGCTTTGGATTTCCAGGCTAACTACAGCTGGTTTCGTTTTTTTTGCGCTTGTTGCGAGTGGTTTTAATTAGCGCGACGTCTTGGGAGCTGCACgcgtttttatttaaaaataacgaGGTCGAATGTTTTCGTGAAGACCTGTTGTATTGTTGGAATCTACGCCGGAGCGTCTTTTCAGCCAGAGTTCTCTCGAGTTTCATGCGTTTTTAAGAGACAAACGGTCGTAATGAGAGCGCTTTGCGTGGCACTGCTGTTTTTACACGCGTCGGGAAGCGGGAAAGCGGCTGGCGCGAGCGGCGCGAAGGGAAACCGCTTCGTGTGCACCGCCGTGCCAGCGGGCGCCGACCTCAGCTGCCCGGTGGAAGCGACCAACCGGGTCCAGAGCACGAGTCCGCAGGAGGAAGAGCTGCGGAATACCATCATTCAGCTCCGAGAGACCATCCTGCAGCAGAAGGAAACTATCGTAAGTCAGCAGGGCACCATCAAAGAGCTCAACTCCAAACTCGCGCGCTGCGAGGCGGACGCCAAGTCCAGGGGCGGCGCGCGCAGGAAGGATTATAGTAAAAACACGATGGGCGACCTGCCGCGTGACCCCACGGAGACCGTGGAGCAGCTGGGCAAGACCATGCAGAGCCTCAAAGACCGCCTGGAGAACCTGGAGCAGCAGCTGCGTGCCAACACATCAGGTGGGAtgtttcccaacgagctgagaGACCTGCTGAAGCGTCGTCTGACCGACCTGGAGAGCCAGCTGCTGACCAGAGTCGCCGAactggaggaggagaagagcCAGCTGTACAACGAGACCACCGCTCACCGGCAGCGCACCGAGAACACCCTCAACTCGCTGCTGGAGAGGATCACCGAGCTGGAGAAAAGTAACAGTGCGTTCAAATCCCCGGAGGACTTTAAGGTGTCTCTGCCTTTGCGAACCAACTACTTGTACGGCCGCATCAAGAAGAGCTTGCCAGAGATGTACGCCTTCACCGTGTGTATGTGGCTCAAGTCCAGCGCCAGTCCTGGAATCGGAACCCCGTTCTCTTATGGCGTCCCGGGACAAGCCAATGAGATTGTGCTGATAGAGTGGGGAAACAGCCCCATGGAGCTGCTTGTCAATGATAAGGTAGCTCAGCTTCCTCTCTCTGTGAGTGACGGCCGCTGGCATCACATCTGCATCACCTGGACAACCAGAGACGGCTTCTGGGAGGCATATCAGGATGGAGAGAGATTAGGGACCGGAGAGAACTTGGCCCCCTGGCACCCAATTAAACCTGGAGGAGTCATTATCCTGGGCCAAGAACAGGACATCGTAGGAGGAAGATTTGATGCCACTCAAGCCTTCGTAGGAGAGTTAAGCCACTTTAACATGTGGGACAGAGTCCTGCGTCCTATAGACATCTCTGCTATGGCCAACTGCTCAGCCTACATGCCTGGCAACGTGGTGCCGTGGGTCGATGCCAACGTGGAGGTATTTGGCGGTGCCACAAAAGCAGCTCTGGAGATTTGTGAAGACCGTCTCTTTGATTCCTAAGGACACGTCTGTCAGATTGGAAGCGTTCTCGTTATCGAGGTAACCCACGTCCCAATGCCGCGCTGGGAACTTTACAAAGGTGGTTCAAAAGAAACACACGTTTACACGTTTTCACACAAAGGATTATTTCGTCCTCTATTCTGCTTTACGTCTGTTGAGACTTTGCTGTCAGCCCGACCAATAactaaaatgacttaattagaaaaaggaagaaaaaatatCAGTCTGCACTTTCAAGGTCAAAATAGAGTATTTGAGGCTTTGGCTGAAGCTAAACATTTTGTTGATATTATATATGCTTTTCTCTGTGTTGCGTCCTTCAAAAACTTCTTCTCTCCACAGACTCGTGGGTATTTTAAGAACTGCAGTAAAAGATGagtttttttgccattttcgCTTCGAGCTTTTGTCGTGTCGTGTATAGGCCGATGCCCTTCAAACCCCTGAGAAAAAAATCCAACTGCATAGTTTCAACGtaagctttattaaaaattaacgAATGAGCTAGACTGTGACGTCGCACATACGGAGGGGCGTTCAGACATTCAGAAGCGTCTTTATGTCTGTGATCCAAAGATTAATGGAGGGAACGttcgcatttaaaaaaaaaaaaatcttctttaatATCGCTATCCCTCACCGGCTGCCGTCTCCAGCAGATCTGACATCCAGAAAACCTTAAAGTAGCAAAGCTGCCAAGGACTGACCCGCAGCTCCCAGGAGAAGGTCTGGCTGCTGTGACTCACCCCGTCAAGCTAGATTGATTTCATTCGGTTTGTGAATCCCGAATTGTGCTATCTTTGAAACGTTTGTAAAGGGTTTTGACGCGAACAGATCACGGCGTCGTGAGATTAACTGTGAGACCTCGACCGGGAATGTGTgctatacttttttaataacgTTTCATTTAGAGATGAAATTCTGATAGGCGCTAATGAGGTTGATGGCGTTTGCGCTCGTTTAAGCGCGACGTCGGGAGGTTTGATTTATCTGACAGTTTGATGCTACGAatgggtgaatctcacaaaaactGTCAAGGTCATGTTTCCCTCCGAAacctaaagagaaaaaaatagagaaaatatattttgcataagaaaatgaaacctATTTTTAATCGTATTTTTGCACTGTacctagtgctgtcaaacgattagtgtgataataaataatatataaatgtataaatgaagtTTTAAGCACATTTCCCATAGATTCTCATTAGcgtaatgcaatatatatatatatattatttattgtgaagTGTTTATGGTGTCCTGGTAGTATGGTTACTAGGTACCGCCTTCATTGCTTTTAACGTAAATATTACTTAACTGAAATGTTCTTGAAATAAAACCAGTATTACAGTCATTACGATAATGAGAATCAACCTTGAGCACTCAAAAGGCTTAGGTAAAAACCCGAACACGGGAAACGTGCTTATTACCGTAAAAACAATGTCacaaaacggaaaaaaaaaataggggtTGTTTTCGTGAGATTCACTTGTGTGCTTTCCGATTTTATTTGTGCTTGATCTATTTAGACAACTTCAAACCGTACATTTGTGTTGAAGTAGAGCAGTGCAATATATATATGGGACACTTTATGTAAATGTGGTCCTCGGCATCGTTTCTGTGTTTTCACGTCTAAATGCACCGCTGGGCCTGTCGCTCTCACTCTGTCTCGCTGTGTTACAtggatgttttcatttcatctttcaACTTGTCGTGCACAAAGGCCAGATCAAAGTCTGTGAAATTCACCGTGGTGCAGCGTTCTCACACAATAGAcactaataatgcattagtgTGTTTCCCTCGTCGACACGTGTTTGTATTTGGGCTACGAGAGCTCTCTCGCTCGACCGAAACGCACTGCAATGAGATCAAACTCTTTTGGATACTCGGTTTCTTTGGTTTGAATGTAATCTACTGCTATTTTGTGTCATAAATGTACTTAGAAGAACAAAAATCTCACATGGCAACGCATTTTGCGTCTGTTATGCTGCCTTCAGGTCCTGTTGAAATCAACGTATGTTAAGTTATACAAACGACGGGAACCTGAATCACGGTGAAACGGCGATATTCGGACCGAATCATGATATGCCATTACACACGTTGGATTCGAAGGCAGCATTAGGGCAAAATGTTTACTTGTTTGTAATCTGACCTGATTTTGTTCAGAATGTAACATGATATTTTCGTCCGAAATGAATGGCCTTTTCTGAGCACCGACTGTGCTTTCTGGGTTTTTCAAGGATTCAACCCCTAACGTAAGACCACGGCGTGAAACGGCGAGAGCGAGGAAAATaatagaccaaaaaaaaaatgggtttaaTGTGAAATCTCTCTTTCCTCGTACACAGAGCAACCTGGGGATGTTGTTCAGCATGGAGGAACGGTTGAATGTCCTTTCTCACCCAATAAATGATTCTGAAAACCA
>XM_043228183.1
TCAATCCGCGCGCTTCTCCAGCGGAACCAAACCGCGCGCGCCTCGCTCTCTATATTAATCGGGTGAAGCGCCGCTGTCCGTTCAGCACCGCTGACTGTGTGAAGAGAATTAAAGAGCTGACAGTCGGCTTCGTTTGGACAGCTACTTGTTTGTGAGTGATTTTGCTCAAGTGACAGGGAGTTAAATGCGTTTGACGCGTCTGTGAGAAGGACTCCAACAGTTTGTTTGGCATACTCGGTGATTGCGCGAAGAGAGCGGCGCTCGGGCTGTGCTTTGGATTTCCAGGCTAACTACAGCTGGTTTCGTTTTTTTTGCGCTTGTTGCGAGTGGTTTTAATTAGCGCGACGTCTTGGGAGCTGCACgcgtttttatttaaaaataacgaGGTCGAATGTTTTCGTGAAGACCTGTTGTATTGTTGGAATCTACGCCGGAGCGTCTTTTCAGCCAGAGTTCTCTCGAGTTTCATGCGTTTTTAAGAGACAAACGGTCGTAATGAGAGCGCTTTGCGTGGCACTGCTGTTTTTACACGCGTCGGGAAGCGGGAAAGCGGCTGGCGCGAGCGGCGCGAAGGGAAACCGCTTCGTGTGCACCGCCGTGCCAGCGGGCGCCGACCTCAGCTGCCCGGTGGAAGCGACCAACCGGGTCCAGAGCACGAGTCCGCAGGAGGAAGAGCTGCGGAATACCATCATTCAGCTCCGAGAGACCATCCTGCAGCAGAAGGAAACTATCGTAAGTCAGCAGGGCACCATCAAAGAGCTCAACTCCAAACTCGCGCGCTGCGAGGCGGACGCCAAGTCCAGGGGCGGCGCGCGCAGGAAGGATTATAGTAAAAACACGATGGGCGACCTGCCGCGTGACCCCACGGAGACCGTGGAGCAGCTGGGCAAGACCATGCAGAGCCTCAAAGACCGCCTGGAGAACCTGGAGCAGCTGCGTGCCAACACATCAGGTGGGAtgtttcccaacgagctgagaGACCTGCTGAAGCGTCGTCTGACCGACCTGGAGAGCCAGCTGCTGACCAGAGTCGCCGAactggaggaggagaagagcCAGCTGTACAACGAGACCACCGCTCACCGGCAGCGCACCGAGAACACCCTCAACTCGCTGCTGGAGAGGATCACCGAGCTGGAGAAAAGTAACAGTGCGTTCAAATCCCCGGAGGACTTTAAGGTGTCTCTGCCTTTGCGAACCAACTACTTGTACGGCCGCATCAAGAAGAGCTTGCCAGAGATGTACGCCTTCACCGTGTGTATGTGGCTCAAGTCCAGCGCCAGTCCTGGAATCGGAACCCCGTTCTCTTATGGCGTCCCGGGACAAGCCAATGAGATTGTGCTGATAGAGTGGGGAAACAGCCCCATGGAGCTGCTTGTCAATGATAAGGTAGCTCAGCTTCCTCTCTCTGTGAGTGACGGCCGCTGGCATCACATCTGCATCACCTGGACAACCAGAGACGGCTTCTGGGAGGCATATCAGGATGGAGAGAGATTAGGGACCGGAGAGAACTTGGCCCCCTGGCACCCAATTAAACCTGGAGGAGTCATTATCCTGGGCCAAGAACAGGACATCGTAGGAGGAAGATTTGATGCCACTCAAGCCTTCGTAGGAGAGTTAAGCCACTTTAACATGTGGGACAGAGTCCTGCGTCCTATAGACATCTCTGCTATGGCCAACTGCTCAGCCTACATGCCTGGCAACGTGGTGCCGTGGGTCGATGCCAACGTGGAGGTATTTGGCGGTGCCACAAAAGCAGCTCTGGAGATTTGTGAAGACCGTCTCTTTGATTCCTAAGGACACGTCTGTCAGATTGGAAGCGTTCTCGTTATCGAGGTAACCCACGTCCCAATGCCGCGCTGGGAACTTTACAAAGGTGGTTCAAAAGAAACACACGTTTACACGTTTTCACACAAAGGATTATTTCGTCCTCTATTCTGCTTTACGTCTGTTGAGACTTTGCTGTCAGCCCGACCAATAactaaaatgacttaattagaaaaaggaagaaaaaatatCAGTCTGCACTTTCAAGGTCAAAATAGAGTATTTGAGGCTTTGGCTGAAGCTAAACATTTTGTTGATATTATATATGCTTTTCTCTGTGTTGCGTCCTTCAAAAACTTCTTCTCTCCACAGACTCGTGGGTATTTTAAGAACTGCAGTAAAAGATGagtttttttgccattttcgCTTCGAGCTTTTGTCGTGTCGTGTATAGGCCGATGCCCTTCAAACCCCTGAGAAAAAAATCCAACTGCATAGTTTCAACGtaagctttattaaaaattaacgAATGAGCTAGACTGTGACGTCGCACATACGGAGGGGCGTTCAGACATTCAGAAGCGTCTTTATGTCTGTGATCCAAAGATTAATGGAGGGAACGttcgcatttaaaaaaaaaaaaatcttctttaatATCGCTATCCCTCACCGGCTGCCGTCTCCAGCAGATCTGACATCCAGAAAACCTTAAAGTAGCAAAGCTGCCAAGGACTGACCCGCAGCTCCCAGGAGAAGGTCTGGCTGCTGTGACTCACCCCGTCAAGCTAGATTGATTTCATTCGGTTTGTGAATCCCGAATTGTGCTATCTTTGAAACGTTTGTAAAGGGTTTTGACGCGAACAGATCACGGCGTCGTGAGATTAACTGTGAGACCTCGACCGGGAATGTGTgctatacttttttaataacgTTTCATTTAGAGATGAAATTCTGATAGGCGCTAATGAGGTTGATGGCGTTTGCGCTCGTTTAAGCGCGACGTCGGGAGGTTTGATTTATCTGACAGTTTGATGCTACGAatgggtgaatctcacaaaaactGTCAAGGTCATGTTTCCCTCCGAAacctaaagagaaaaaaatagagaaaatatattttgcataagaaaatgaaacctATTTTTAATCGTATTTTTGCACTGTacctagtgctgtcaaacgattagtgtgataataaataatatataaatgtataaatgaagtTTTAAGCACATTTCCCATAGATTCTCATTAGcgtaatgcaatatatatatatatattatttattgtgaagTGTTTATGGTGTCCTGGTAGTATGGTTACTAGGTACCGCCTTCATTGCTTTTAACGTAAATATTACTTAACTGAAATGTTCTTGAAATAAAACCAGTATTACAGTCATTACGATAATGAGAATCAACCTTGAGCACTCAAAAGGCTTAGGTAAAAACCCGAACACGGGAAACGTGCTTATTACCGTAAAAACAATGTCacaaaacggaaaaaaaaaataggggtTGTTTTCGTGAGATTCACTTGTGTGCTTTCCGATTTTATTTGTGCTTGATCTATTTAGACAACTTCAAACCGTACATTTGTGTTGAAGTAGAGCAGTGCAATATATATATGGGACACTTTATGTAAATGTGGTCCTCGGCATCGTTTCTGTGTTTTCACGTCTAAATGCACCGCTGGGCCTGTCGCTCTCACTCTGTCTCGCTGTGTTACAtggatgttttcatttcatctttcaACTTGTCGTGCACAAAGGCCAGATCAAAGTCTGTGAAATTCACCGTGGTGCAGCGTTCTCACACAATAGAcactaataatgcattagtgTGTTTCCCTCGTCGACACGTGTTTGTATTTGGGCTACGAGAGCTCTCTCGCTCGACCGAAACGCACTGCAATGAGATCAAACTCTTTTGGATACTCGGTTTCTTTGGTTTGAATGTAATCTACTGCTATTTTGTGTCATAAATGTACTTAGAAGAACAAAAATCTCACATGGCAACGCATTTTGCGTCTGTTATGCTGCCTTCAGGTCCTGTTGAAATCAACGTATGTTAAGTTATACAAACGACGGGAACCTGAATCACGGTGAAACGGCGATATTCGGACCGAATCATGATATGCCATTACACACGTTGGATTCGAAGGCAGCATTAGGGCAAAATGTTTACTTGTTTGTAATCTGACCTGATTTTGTTCAGAATGTAACATGATATTTTCGTCCGAAATGAATGGCCTTTTCTGAGCACCGACTGTGCTTTCTGGGTTTTTCAAGGATTCAACCCCTAACGTAAGACCACGGCGTGAAACGGCGAGAGCGAGGAAAATaatagaccaaaaaaaaaatgggtttaaTGTGAAATCTCTCTTTCCTCGTACACAGAGCAACCTGGGGATGTTGTTCAGCATGGAGGAACGGTTGAATGTCCTTTCTCACCCAATAAATGATTCTGAAAACCA

Function

symbol description
nptx2a Acts upstream of or within regulation of glutamatergic synaptic transmission. Is expressed in nervous system. Orthologous to human NPTX2 (neuronal pentraxin 2).

NR:

description
PREDICTED: neuronal pentraxin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228175.1 False 4241 mRNA 0.47 5 26364283 26378411
XM_043228183.1 True 4242 mRNA 0.47 5 26364279 26378411

Neighbor

gene id symbol gene type direction distance location
LOC122341389 NA coding upstream 5466 26358256 ~ 26358813 (+)
srebf1 srebf1,LOC107691218,LOC107713935 coding upstream 305947 26041813 ~ 26058332 (+)
LOC122341388 tom1l2 coding upstream 325386 26024217 ~ 26038893 (+)
LOC122341386 NA coding upstream 376170 25986278 ~ 25988109 (+)
noxo1a noxo1,LOC107690034,LOC107724744,LOC107559526,LOC107691242,LOC107713950 coding upstream 401070 25959513 ~ 25963209 (+)
LOC122341701 baiap2l1b,LOC107665916,LOC107548703,LOC107691223,LOC107713954,LOC107724726 coding downstream 79212 26457623 ~ 26491717 (+)
tecpr1b LOC107665885,LOC107724727 coding downstream 121599 26500010 ~ 26515546 (+)
pvalb5 pvalb5,LOC107691230,LOC107724738,LOC107713944,LOC107548707,LOC107666047 coding downstream 163557 26541968 ~ 26546505 (+)
pvalb1 pvalb1,LOC107713958,LOC107565876,LOC108279005,LOC107691228,LOC108412819,LOC107665844 coding downstream 169363 26547774 ~ 26551456 (+)
pvalb4 pvalb4,LOC100305042,LOC107724737,LOC107665849,LOC107548706,LOC107565875 coding downstream 174469 26552880 ~ 26554257 (+)
G23508 NA non-coding upstream 172437 26179232 ~ 26191842 (+)
G23189 NA non-coding upstream 230449 26131602 ~ 26133830 (+)
G23176 NA non-coding upstream 291590 26059352 ~ 26072689 (+)
G23170 NA non-coding upstream 416447 25947086 ~ 25947832 (+)
G23160 NA non-coding upstream 487128 25874314 ~ 25877151 (+)
G23550 LOC107691223,LOC107724726,LOC107713954,LOC107548703,LOC107665916 non-coding downstream 49808 26428219 ~ 26435848 (+)
G23552 NA non-coding downstream 114535 26492946 ~ 26497967 (+)
G23594 helz,LOC107665819,LOC107691233,LOC107565856 non-coding downstream 266860 26645271 ~ 26646452 (+)
G23659 NA non-coding downstream 344401 26722812 ~ 26723027 (+)
G23664 LOC107548683,LOC107666079,LOC107654573,LOC107752704,LOC107743002 non-coding downstream 350397 26728808 ~ 26729365 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 411532 25948054 ~ 25952747 (+)
LOC122341383 tom1l2 other upstream 452654 25894590 ~ 25911625 (+)
G23146 NA other upstream 513703 25837143 ~ 25850576 (+)
LOC122341783 arl16,LOC107583744 other upstream 530081 25832505 ~ 25834198 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 701962 25661048 ~ 25662317 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 272418 26650829 ~ 26705731 (+)
ubald2 ubald2,LOC107548684 other downstream 380652 26759063 ~ 26772903 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other downstream 420020 26798431 ~ 26801401 (+)
G23695 NA other downstream 468312 26846723 ~ 26847357 (+)
LOC122335546 NA other downstream 903416 27281827 ~ 27282406 (+)

Expression


Co-expression Network