ier2a (LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775)


Basic Information

Item Value
gene id ier2a
gene name LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12678396 ~ 12679757 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228192.1
ACGCTGTGGTTTACTTCGGTGAATGAAACGACTGTGAAAGTGGACTGAgctcaggggaaaaaaaacctaaacagtGTTTGTATATTCTCAAAAGTTAACTTAACAACTAAGAACAATGGATGTCACAGCAGAGGCCAAGCAGATTATGGTCCAGGCGTTGAGTAAAATGTACAGCTCGCGCACGCAGCGCGGTGGACTCCGTCTCCACCGGAGCCTGCTGTTGACGCTCGTCATGAAATCTGCAAGAGATATCTACCACTCTGCCCGGCTGACGAGCGATAAAAACGGGCAATTTGACACGCACGGTGTCACAGAGAGCGCAGCACAAGCAGAAGAGCCCATGGACACAACGAGCTCCACGACTGCACCTCTGCGCTCGACTGAGACGCAGGCTACCGAGGACGAGCAGAAGTCCGGACTCGAGGGTCATTCGCATCTACACGACCCCGCAGGACTCGCGGTGGACAAAGAGAACTGCAACCCAGCCGGAACGGACCGTCACTCTAGAAAGCGACGGAGCAAAACAGCCACTGACCCCGACTTTCTGCCGTGCAAAAAAGCCAAACTGGAGTTCGTGGAGGTCAGAGGAATTCTTCAGGCGACCCAGAGTAACTCCGCTAACTGCGGCAGGGCGCTGGACTCGCTGTCACTTGTGCCTATGCCAAGAACTATCGTCACGTTTTGAAAAAGACTATAAGAGCAATGGCACAACGCAGGGACAGTAGAGTGAACTTTGCGCACTACTGAGGGAAGTGAACCGTGGCGCGTATCTGCCGCCGAGTTCCTCCTGGAGCATTCAGGGCACTTGGCCGACGTGGAGAAGGAGTCTGTGAGTGATTGCTCACAGTGGAACAATGTGACAGCTGATTACTCATCGGAGAGAGGGTCGTTTGAAATTTGTGACTAATGGTGCTCGTTCAAACCACCGTGTTTCTCTTGACTCATGGCGTGACGCGGTACTATTACTTCTACAAGAGGTGTGACTGGGAGAACTTCCACGGATATTCAACATTGAACATTattgactatttatttattgaccgAGAATGGTTTCTggttgttctgtgtgtgtggttcGGACTGTATTCGTCTAAGGTGCTGTCAGGATTGTCCGGTCTTTACGCTGACTGGGATTTTTTTGTGGGCTTTTTGCTGGAAAATCCTTAAGCTGTTGTGAAACTTACTTACTGGTCCAAATGTAACAGACCACCTCAAAGCAAACCATTGTAGCCGGTCAGTCAGGTAACGACCAGGGATTTTCCAGCAGCTCAACGTGACATAAGCTACTAAAAACAGAGAGACATCGCGATGCTATGATGTAAATCTACCTCActtttgtacaataaaatattctaaaccgta

Function

NR:

description
PREDICTED: immediate early response gene 2 protein-like

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228192.1 True 1362 mRNA 0.49 1 12678396 12679757

Neighbor

gene id symbol gene type direction distance location
LOC122329583 nacc1,LOC107690702,LOC103910274,LOC107737738,LOC107689628,LOC107554144,LOC107723200,LOC103025552 coding upstream 1733 12661681 ~ 12676663 (+)
mpp2a mpp2a,LOC107582977,LOC107758486,LOC107737744,LOC108434916,LOC106600860,LOC106607467 coding upstream 188334 12477842 ~ 12490062 (+)
pyya pyya,LOC107689636,LOC107554138,LOC107583099,LOC107758485,LOC107695175 coding upstream 201124 12474069 ~ 12477272 (+)
hspb9 LOC107758484,LOC107583100,LOC107695165,LOC107689635,LOC107554137,LOC107737748 coding upstream 221487 12456009 ~ 12456909 (+)
rusf1 zgc:162613,LOC107729465,LOC107658510,LOC107737752,LOC107554129,LOC107689643 coding upstream 402037 12272640 ~ 12276359 (+)
alkbh7 NA coding downstream 90815 12770572 ~ 12772182 (+)
LOC122332168 gtf2f1,LOC107737737 coding downstream 215569 12895326 ~ 12900216 (+)
LOC122332118 alkbh7,LOC107723204,LOC107690706 coding downstream 292720 12972477 ~ 12974627 (+)
aldh3b1 aldh3b1,LOC107698763,LOC107601228,LOC108444046,LOC108258475 coding downstream 423519 13103276 ~ 13107847 (+)
carm1 carm1,LOC107698604,LOC107689626,LOC107753277,LOC107724424 coding downstream 436274 13116031 ~ 13129608 (+)
G19287 NA non-coding upstream 449876 12227935 ~ 12228520 (+)
G19274 NA non-coding upstream 543439 12132629 ~ 12134957 (+)
G19263 NA non-coding upstream 559621 12118538 ~ 12118775 (+)
G19257 NA non-coding upstream 603893 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 605323 12072719 ~ 12073073 (+)
G19579 NA non-coding downstream 1501 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 3061 12682818 ~ 12686371 (+)
G19656 NA non-coding downstream 317460 12997217 ~ 13056733 (+)
G19629 ighv4-5 non-coding downstream 326053 13005810 ~ 13096854 (+)
G19627 NA non-coding downstream 380403 13060160 ~ 13061606 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 149593 12519837 ~ 12528803 (+)
G19326 NA other upstream 164675 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 363350 12303364 ~ 12315046 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other upstream 428399 12232427 ~ 12249997 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other upstream 560457 12114048 ~ 12117939 (+)
LOC122332158 LOC107583070,LOC107737766 other downstream 155624 12835381 ~ 12987913 (+)
si:dkey-204f11.64 LOC105898698 other downstream 432720 13112477 ~ 13114856 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 1018780 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 1316204 13995961 ~ 14002378 (+)
G19973 NA other downstream 1369733 14049490 ~ 14053032 (+)

Expression


Co-expression Network