LOC122330909 (gfap,LOC107729544,LOC107721967,LOC107658466)


Basic Information

Item Value
gene id LOC122330909
gene name gfap,LOC107729544,LOC107721967,LOC107658466
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11681350 ~ 11688119 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228279.1
CACACTCGATCTCATTTTCCTCTGGCATGGAGCCCCAGCGAGCTTTCTCGTCCTACCGAAAGCGCTTCGGGACTTCGGGCGGCTCCCCGTCCATGGGGGTCACCAGCCGCCTCAGCACGGGCCGCCTGTCCCTCCACAGCAGCCCGCGCCACCTGACCTCCAGCCCCATGACCCTGTCCACCTCGCGCCTGTCCCTGGGCGGTGAGCGGCTGGACTTCTCGGCGGACTCCCTGCTGAAGGCCCAGTACCGGGAGACGCGCACCAATGAGAAGGTGGAGATGATGGGTCTGAACGACCGCTTCGCCAGCTACATCGAGAAAGTGCGCTTTCTGGAGCAGCAGAACAAGATGCTGGTGGCCGAACTGAACCAGCTGAGGGGGAAGGAACCCAGCCGTCTGGGGGACATCTACCAGGAGGAGCTGAGGGAGCTCCGCAGGCAGGTGGACGGCCTCAACGCCGGTAAAGCCAGACTGGAGATCGAAAGAGACAACCTGGCTTCAGACCTGGTCACACTTAAACAGAGACTTCATGATGAAACTGCTCTACGGCAAGAAGCAGAAAACAACCTCAACACCTTCAGACAAGATGTGGATGAAGCCGCTCTGAACCGTGTACAGCTGGAGAGGAAGATTGATGCTCTGCAGGATGAGATTAATTTCCTGAAGAAGGTCCATGAAGAGGAGATGAGAGAGCTGCAGGAGCAGCTGATGGCCCAGCAGGTTCATGTGGATCTGGATGTGTCTAAGCCAGACTTAACTGCTGCCCTGAAGGAGATCAGAGCTCAGTTTGAGGCCATGGCCACCTCCAACATGCAGGAGACTGAGGAGTGGTATCGCTCGAAgtTTTCTGACCTGACTGATGCAGCCAACCGTAACGCAGAGGCTCTGAGACAAGCTAAACAGGAGGCCAACGAGTATCGTCGACAGATTCAGGGCCTGACCTGCGACCTGGAATCTCTTCGTGGATCTAACGAGTCTCTGGAGCGCCAGCTGCGAGAGATGGAGGAGCGTTTCGCCATTGAGACGGCCGGTTACCAAGACACCGTGGCCCGTCTGGAGGACGAGATCCAGATGCTGAAGGAGGAAATGGCCAGACACTTGCAGGAGTACCAGGATCTGCTCAATGTAAAACTGGCTCTGGATATTGAAATTGCCACCTACAGGAAGCTGCTTGAAGGAGAGGAAAGCAGAATCACTGTTCCGGTGCAGAACTTCACCAACTTACAGTTTAGAGaCACCAGCTTGGACACTAAGCTGACTCCTGAGGCTCATGTGAAGAGGAGCATAGTTGTACGAACCGTTGAGACTCGTGATGGAGAGATTATTAAGGAGTCCACCACGGAGAGGAAGGATCTGCCGTAAACAGTCTCAGACACTGGATTGGAGGCAACTGAAGAGTTCATCACTAATGCTTCTGGATGCTGTGATCAAATATGTGATTTCTtgcccactctctctctctctcgcctaATTCTCTCCTAGTCTATGTAGTTCCTGGGAACTGTATTCAGTTATAATAGCCACTGTAAGCAAAAAGTGTTTCGATCTCTCTTTATCTGTCTTTATTTGTGGCAAAAGGTCTTTGCATGATATTAGACTAGATTATCGCCGATTGTGCCATAAAAAGTCATGGTTGGACAGATGAAAGTAGAAAGTAGAACAAGATGTAGTTAGTGGTCAGAGCGGGTGCACgtgaaatatagtttttttgtttttttttgtcaggcacAAACTGTAGAGAATGCATTCTGAAATGTATCGTAGTCTATATGTACTAGATGAGGAAGAGCAGGACTGAAAGTTTTTGAATCTAAATGGTCAGTGTTGATGTAAGGCAGAAGGAAACTATAACATTAAGGTCTTTGTGAGGGTTTTAAAGGAATGATGGATTTTGTCAGCGGTGCTATATGAACATTTTACACCACATTTTCCCTCTTTCACTGTGTATACACAAAGTTCTTGCACATTAGCTAACTAAAGCATCTCTGTGGACCCaggttaaaatgctttaaaatgcttgttGACTGTTAATTGACCTGTAGAAAACAtataaatagtacattttaatCAACAAAAAGCAGTATCTTACTGAACTCATAAAGTAAACATCTGACATATTGTCTTAATAATGTGCAGTCATATTTACCATTGATCGATGTTCTTTTTCTTAATTCAAATTTCCAACCATTTTATTAGGAATTCGTGTGATCGAGTTTCCCATGCAGATTGCACTCGTGTTCAAGTTTGCAACACAATTTCAATTGCGAAAATCAACAGgaagctgcttggtttgaaagtgacttctgtGTGACCTTTATACATCTCCACAGTATTGAAAATAGCcattcatgcattcaaaaaGTAACTGCAATTTGGCTAATGTGACTGTACATTTACTAAAAACTCATTCTGCCAGGTAGCACTGAACTATGTTTTCAGCTGAGCAGGGCTAACTTTCACACTACTGCTTCATACTGAACCGGACATCACTTTATTGTGGTGTCTAATACTGACACTaataaaagatcattttga

Function

symbol description
gfap Predicted to enable structural molecule activity. Located in cytoplasm and type III intermediate filament. Is expressed in several structures, including anterior neural keel; nervous system; neural tube; neuronal stem cell; and optic vesicle. Human ortholog(s) of this gene implicated in Alexander disease. Orthologous to human GFAP (glial fibrillary acidic protein).

NR:

description
PREDICTED: glial fibrillary acidic protein-like

GO:

id name namespace
GO:0045098 type III intermediate filament cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05640 GFAP; glial fibrillary acidic protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228279.1 True 2534 mRNA 0.47 9 11681350 11688119

Neighbor

gene id symbol gene type direction distance location
kcnh6a kcnh6a,LOC107583039,LOC107658465,LOC107674162,LOC107570755,LOC107721966 coding downstream 5023 11645898 ~ 11676327 (-)
ccdc47 ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463 coding downstream 41293 11633421 ~ 11640057 (-)
moto LOC107729445,LOC107658460,LOC107583041,LOC107674174,LOC107721968 coding downstream 78969 11597240 ~ 11602381 (-)
LOC122341820 LOC107583052,LOC107729535,LOC107658457,LOC107732863,LOC107674145,LOC100534815 coding downstream 229907 11449629 ~ 11451443 (-)
apnl apnl,LOC107658456,LOC107583051,LOC107729534,LOC107732855,LOC107564020 coding downstream 233647 11445525 ~ 11447703 (-)
ddx42 ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322 coding upstream 43874 11731993 ~ 11739714 (-)
rnf113a rnf113a,LOC107693494,LOC107658472,LOC107729443 coding upstream 62109 11750228 ~ 11753580 (-)
LOC122338209 NA coding upstream 146258 11834377 ~ 11836695 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding upstream 149524 11837643 ~ 11843610 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding upstream 205276 11893395 ~ 11900727 (-)
G19117 NA non-coding downstream 270634 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 345550 11333756 ~ 11335800 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 911952 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 983811 10689164 ~ 10697539 (-)
G19375 NA non-coding upstream 81603 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 155895 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 178888 11867007 ~ 11871906 (-)
LOC122330904 NA non-coding upstream 280475 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 331464 12019583 ~ 12023427 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 252171 11411985 ~ 11429179 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 616752 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 1285009 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 1470734 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 2218445 9426572 ~ 9462905 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 6153 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 24701 11712820 ~ 11728001 (-)
G19383 NA other upstream 165629 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 221656 11909775 ~ 11920767 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 651068 12339187 ~ 12343872 (-)

Expression


Co-expression Network