foxred2 (foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880)


Basic Information

Item Value
gene id foxred2
gene name foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24539323 ~ 24545214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228301.1
TCGTGACGTCAAAGGTACGCTCTGTCTTGTGTCTGTGGGAGATGTTATGAAAACTGTGGAATCGCAAAGATGTAGTTCACAGAACTCCCGCGGTTTATTTCCctattttctgtttctgaagGTTTCGCAGAATCAGCTGTGGTTGACGGCCTCATGTGTGTGATTCAGCCTCTCTTCAGGCTCCTGTGTGTCCTGTCCTTGGTTCTGGCCTGTTCCGGTTCTGGTCCTGGTTCCGGTCCTGGTTCCGGTCCTGGTTCCGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCTTCACGGCCGTAACAACAGCGTGAGTCATGAGTACTGTGTGCTGGGAGCTGGACCTGCGGGGCTCCAGATGGGCTACTTTCTGTCCAGGAGCCGGAGAGATTACGTCGTTCTGGAGCGAAACACAGGACCAGGCAGCTTCTTCCGCATATATCCTCGCCACAGGAAGCTCATCAGCATTAACAAAATATACACGGGGAGGAGGAACAGGGAATTCAACCTGCGTCATGATTGGAACTCCCTGCTGAGCGACAGGACCGACCTGCTGTTTCAGCGAATCAGCCGAGAGCTCTACCCCAGTGCAGACGACTTCCCACGCTACCTCTCGAGGTTCGTGACGGAGCTGGGACTGAAGGTCAAATACGGAGCTGATATAGGGAGAATCAAAGCGTCAGATTTGAACGGAGACCAAGGCTACGTTCTGAACGATCAGAATGGTGTCAGTTATCAATGCAgagTCCTGTTGGTGTCCACTGGCCTTTGGGTTCCTCAGCAGGTGGATTTTCTCGGCTCTGACCTGGTAGAGGGTTACGAGTCTATTCCCACTGATCCCGAGGAGTTTAAAGACCAGGCTGTGTTAATCCTCGGCAAAGGAAACTCCGCCTTTGAGACGGCTCAGAGCATCTTGGGTAGAGCGAGCCGGGTTCACTTGTACAGCCCCAGCCCTGTGCGACTCGCATGGCAGACGCACTACGTCGGGGACCTCAGgGCAGTAAACAACGAGCTGTTAGACACGTACCAGCTGAAATCTCTAGACGGTCTTGTAGAGGGAAGACTAGAGGATATAGCCATTGTCCGAAGAGAAAAAGATGGAGGGAAGAGAAGAACAGCAAAGAAAAGAAGTCCAACACCAACGGAGAGAAAGCAGCAGCTGTATTTAACTCTTACTGAACTTCTTGACCAGAATGGCAACAACATTTCAAAGGTCACTGGGCAGAACCTGCCTGGTTACCACACTGATAACTTCTCACTCAGACAGCCGTATGACCTCGTCCGATGCCTGGGCTTTCGTTTTAACTTCTCCGTTTTTTGGGGTAAGGAAACACCCGGAAACTCTGCACGGCCACCCCAGAGCAGCGGTGCCCGAGGCCGGTTGCCAGGGACAACAGCCTGGTATGAAGGCAGGGGGACGCCCAACATGTTTGTCCTGGGCACCGCAGCTCACTCCAGAGATTATCGTATGTCTGCCGGTGGGTTTGTTCACGGTTTCCGCTACACTGTGCGTGCTGTTCATAAAATCCTGGAGCGGCGTTACCATAACATTGCCTGGCCTGCTACAAAATTACCCATCAGCCAGCTGCAGTCCTGGATCCTTAGGAGAGTGAACGAAGCCTCTGGACCGTACCAGATGTTCGGGGTCCTTGGGGACATTATTCTGCTGCGAGGGTCTTACTGTGAATATCTGGAGGAGTTTCCTCTGCAGGCCCTGCCCCAGCTGTCTGCTCTATCTGGACGGCCTCTTACAGATCACGGCCTACTGGTCTTGGTCATGCAGTATGGACTGAACCGGACCGATACGCTTGGACCGGGTCGAGCCGAGTCAGAATGGACTAAAGCCTGGAGGTCCAACTTCCTCCATCCAGTCCTGTACTACTACAACACACTACCTACAGAGAAGGATATGAGGCGGCGTCCTGTTGGCTGGCCACTACCACGACCTGAGGCCGTTCATCACATGGTTGAGGACTTCTTGACTGAATGGGATCAGCCCGTATCACACAGCCAGCCTCTCAGGCGCTTCCTCGAGCACTGCCTCCAAACCGACCTCAGGGCCTTTTATGCTGAATCGTGTTTCCTTCTGTCCCTCACCAGTCGTACTCCACCCCTCTTCTGCCGTCAAGGTTATTTGAGAAAACAGGGCATTGTGGGAAACAGCCACCTACGACAACATGCCCGTGAGGCGGGACTCATGGCAGATCATCAGGGAGATATTACTCCTGGCAATGATGCATCGGTATCTGAATATCTGAAACATGCTGGCACTGCAGTCCTTTCAACTATGAACTTTGACCTCTGAGAGGCATTAATACTAATGGTACCAAAGAGCAAACCTCTTCAGCTGAAATCACGTTCATCTACCTCCCATTACCTTATCAGTTTACCTGCATTTCCATAAAAAACATCCAGCATCCTGAAATAACGTCAACGTAACAAAACTACTTGCCAAAGTATAGCTTTATATAGTGTTTTATGGTGTTGGGTTTGGTGTTGCAATACAATgagtaacttattttttttatacaatagtTAAAGGTATATAAGATAAGTATTTTTCTTAGGTTGAAATgcatgtacttttattttaactacaATAAAGACATcccaatcattttaaaaa

Function

symbol description
foxred2 Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human FOXRED2 (FAD dependent oxidoreductase domain containing 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228301.1 True 2646 mRNA 0.51 11 24539323 24545214

Neighbor

gene id symbol gene type direction distance location
gcat gcat,LOC107703894,LOC107670921 coding upstream 14723 24521028 ~ 24524600 (+)
LOC122341365 NA coding upstream 164759 24369213 ~ 24374564 (+)
LOC122342039 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 377081 24156356 ~ 24162242 (+)
LOC122342038 mcm5,LOC107703892,LOC107670920 coding upstream 390964 24142816 ~ 24148359 (+)
LOC122342047 gcat,LOC107703894,LOC107670921 coding upstream 397202 24138543 ~ 24142121 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding downstream 197 24545411 ~ 24549093 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding downstream 4013 24549227 ~ 24557112 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding downstream 13532 24558746 ~ 24562589 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding downstream 69385 24614599 ~ 24618241 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding downstream 222415 24767629 ~ 24769271 (+)
G22968 NA non-coding upstream 22325 24133726 ~ 24516998 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding upstream 89453 24268426 ~ 24449870 (+)
G22990 NA non-coding upstream 199669 24338871 ~ 24339654 (+)
G22982 NA non-coding upstream 303248 24233766 ~ 24236075 (+)
LOC122342065 NA non-coding upstream 324349 24212347 ~ 24214974 (+)
G23002 NA non-coding downstream 12497 24557711 ~ 24558261 (+)
G23005 NA non-coding downstream 17598 24562812 ~ 24563127 (+)
G23004 NA non-coding downstream 18032 24563246 ~ 24563895 (+)
G23011 NA non-coding downstream 67312 24612526 ~ 24612751 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding downstream 69953 24615167 ~ 24673712 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 8554 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 90034 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 99860 24434055 ~ 24439463 (+)
G22958 NA other upstream 442164 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 487410 24039902 ~ 24051913 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 176312 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 438067 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 801570 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 866704 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 979095 25524309 ~ 25569403 (+)

Expression


Co-expression Network