hoxb8a (hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220)


Basic Information

Item Value
gene id hoxb8a
gene name hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22703924 ~ 22706737 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228340.1
AGAAGTTGAGCAGGGGGAGGGACAGAGGCGATGCACTTGATCTGATGCAAAGCGGCAGATTTCTCATTAACTTACCCGCTTGAACATATTAATGTGCATATtctcccctcctctctctctccctcggcCCCCCTTCCCTCTCCTGCTCCCTCGCGCTCTCTCCctctcagctctctctctctccctcgctttctctttttctctctttttcattctCTCGCTCCCTTCATATCAGAATCGCGCAGAGCGGCGTCCGTGTAGGGATGCGAGAAGCCGATGGCACGAGGGTCCGACGGAAGACGCAAGCGATCGTGAAAACACGCAGCAAAATATGAAACTTCTCGTTCGCAGCCGCGTAAATCGTAGAAAAACTGGTCGGGAACTGGCACCGTTCACCGGAATTGTGATGCTGGAACTCCACGGCGGGGACGTGCCCATGGAAGCTTCAGCTAAGTTGTTTTAACAAAGGTATACAAACGCGACCCGTTgagtttttttggggggaaaccGAGGCTCGGCTGCTGCGTTGTTTGTTCCCTCAGTAAACGTGAAGCTGACAACTCTCTGAAGCTGCTGCGCTGGTATAAAGACATTCAAACGCGAACCCCCTCGAACAGAATCAGCACccacaacaacagcaaaagatGAGCTCATACTTCGTCAACTCTCTCTTCACTAAATACAAAAGCGGAGACACTCTGCGGCCGAACTATTACGAGTGCGGATTTGCTCAGGACCTAGGGACGAGACCCACCGTCGTGTACGGTCCAGGCACCGGGGCCACTTTCCAGCACGCGCCTCAGATTCAGGAGTTTTACCACCACGGCGCGTCCACGCTCTCCGCGGCTCCTTACCAGCAGAGTCCCTGCGCGGTAACTTGTCACGGCGAGCCGGGTAACTTCTACGGTTACGACGCTCTCCAGAGGCAAACGCTTTTCAGCGCTCAAGACGCCGACCTGGTGCAGTACAGCGACTGCAAGCTCGCCGCGGGGGGCATCGGCGACGAGGCGGACAACGCGGAGCAGAGTCCGTCGCCCACGCAGCTCTTCCCGTGGATGCGACCTCAAGTAGCTGCCGGACGGAGGCGAGGCCGCCAGACCTACAGCCGCTATCAGACGCTGGAACTCGAGAAAGAGTTTCTCTTCAACCCCTACCTGACGCGCAAGCGACGGATCGAGGTGTCGCACGCCTTGGGACTGACGGAACGACAGGTCAAAATCTGGTTTCAGAACCGTCGCATGAAatggaaaaaggaaaacaacaagGACAAGTTTCCGAGCAGCAAGTCTGAACAAGAGCAGATCGAGAAGGAGAAAAGGGAGAAAGAACAGGCATCCGGGACACAGCCAGCCGGCGAAGACTGCGACAAggcaaaacaaatgtaaagcGGATgcgagtgtgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagtgtagACTACGTGTGCCAGTCAATCAAAACGGCAAAGAATAAATAgggaaaataaaacagacaatgaCGAAGAGAATAACGGTGTTTGCATGGGAGGTTTGTCTCACAGAGACGTTTTAATCAAGTCGAGTGGTTACATCTTTCACTCGAGGAAGGAacggaagaagaagaaaaaaatgactgggACCAGACAAACGACTACACACTTGATGTGGCGACCACAGAACTTCAGGAAGACGAAGGACGAGAGGCATTTCTACTTTTTAACTGTTGTTCAGAGAGTATGATAGTGTTAAAGCTAGTCTCATTTCTTTGTGAAATAATTATCGTGAAACCTAAGTTTCTATTGTTAGGATATCGTCATTAACAATTACCTTGGCAGCTGTATAGTTTTTAAGTTAAATGGTGCACTTTTAACTGTTCTCACTTATATGTTATGATGATGACGTAGAAATTAATGACTTCCAACAACATGAAACTGCCTATTTATGCCGTAGAATCTCTTTTTACACGTCTTTGGTTCTTCTTAAATCGatggtatttttttgttgtcttcCTTTCATGGGGTAAGCATGCGCACAGTggattataaaatgaataaacataataaaaaagaattttgaaaaTTGT
>XM_043228350.1
ACAGAGGCGATGCACTTGATCTGATGCAAAGCGGCAGATTTCTCATTAACTTACCCGCTTGAACATATTAATGTGCATATtctcccctcctctctctctccctcggcCCCCCTTCCCTCTCCTGCTCCCTCGCGCTCTCTCCctctcagctctctctctctccctcgctttctctttttctctctttttcattctCTCGCTCCCTTCATATCAGAATCGCGCAGAGCGGCGTCCGTGTAGGGATGCGAGAAGCCGATGGCACGAGGGTCCGACGGAAGACGCAAGCGATCGTGAAAACACGCAGCAAAATATGAAACTTCTCGTTCGCAGCCGCGTAAATCGTAGAAAAACTGGTCGGGAACTGGCACCGTTCACCGGAATTGTGATGCTGGAACTCCACGGCGGGGACGTGCCCATGGAAGCTTCAGCTAAGTTGTTTTAACAAAGGTATACAAACGCGACCCGTTgagtttttttggggggaaaccGAGGCTCGGCTGCTGCGTTGTTTGTTCCCTCAGTAAACGTGAAGCTGACAACTCTCTGAAGCTGCTGCGCTGGTATAAAGACATTCAAACGCGAACCCCCTCGAACAGAATCAGCACccacaacaacagcaaaagatGAGCTCATACTTCGTCAACTCTCTCTTCACTAAATACAAAAGCGGAGACACTCTGCGGCCGAACTATTACGAGTGCGGATTTGCTCAGGACCTAGGGACGAGACCCACCGTCGTGTACGGTCCAGGCACCGGGGCCACTTTCCAGCACGCGCCTCAGATTCAGGAGTTTTACCACCACGGCGCGTCCACGCTCTCCGCGGCTCCTTACCAGCAGAGTCCCTGCGCGGTAACTTGTCACGGCGAGCCGGGTAACTTCTACGGTTACGACGCTCTCCAGAGGCAAACGCTTTTCAGCGCTCAAGACGCCGACCTGGTGCAGTACAGCGACTGCAAGCTCGCCGCGGGGGGCATCGGCGACGAGGCGGACAACGCGGAGCAGAGTCCGTCGCCCACGCAGCTCTTCCCGTGGATGCGACCTCAAGCTGCCGGACGGAGGCGAGGCCGCCAGACCTACAGCCGCTATCAGACGCTGGAACTCGAGAAAGAGTTTCTCTTCAACCCCTACCTGACGCGCAAGCGACGGATCGAGGTGTCGCACGCCTTGGGACTGACGGAACGACAGGTCAAAATCTGGTTTCAGAACCGTCGCATGAAatggaaaaaggaaaacaacaagGACAAGTTTCCGAGCAGCAAGTCTGAACAAGAGCAGATCGAGAAGGAGAAAAGGGAGAAAGAACAGGCATCCGGGACACAGCCAGCCGGCGAAGACTGCGACAAggcaaaacaaatgtaaagcGGATgcgagtgtgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagtgtagACTACGTGTGCCAGTCAATCAAAACGGCAAAGAATAAATAgggaaaataaaacagacaatgaCGAAGAGAATAACGGTGTTTGCATGGGAGGTTTGTCTCACAGAGACGTTTTAATCAAGTCGAGTGGTTACATCTTTCACTCGAGGAAGGAacggaagaagaagaaaaaaatgactgggACCAGACAAACGACTACACACTTGATGTGGCGACCACAGAACTTCAGGAAGACGAAGGACGAGAGGCATTTCTACTTTTTAACTGTTGTTCAGAGAGTATGATAGTGTTAAAGCTAGTCTCATTTCTTTGTGAAATAATTATCGTGAAACCTAAGTTTCTATTGTTAGGATATCGTCATTAACAATTACCTTGGCAGCTGTATAGTTTTTAAGTTAAATGGTGCACTTTTAACTGTTCTCACTTATATGTTATGATGATGACGTAGAAATTAATGACTTCCAACAACATGAAACTGCCTATTTATGCCGTAGAATCTCTTTTTACACGTCTTTGGTTCTTCTTAAATCGatggtatttttttgttgtcttcCTTTCATGGGGTAAGCATGCGCACAGTggattataaaatgaataaacataataaaaaagaattttgaaaaTTGT

Function

symbol description
hoxb8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell population proliferation and posterior lateral line neuromast primordium migration. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural tube; pancreatic system; paraxial mesoderm; and pronephros. Orthologous to human HOXB8 (homeobox B8).

NR:

description
PREDICTED: homeobox protein Hox-B8 isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228340.1 True 2075 mRNA 0.49 2 22703924 22706737
XM_043228350.1 False 2051 mRNA 0.49 2 22703945 22706737

Neighbor

gene id symbol gene type direction distance location
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding upstream 4753 22691178 ~ 22699171 (+)
hoxb10a hoxb10a,LOC107662435,LOC107740623,LOC107585092 coding upstream 14233 22685013 ~ 22689691 (+)
hoxb13a hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955 coding upstream 28804 22673476 ~ 22675120 (+)
nr1d1 LOC107585045,LOC107740628,LOC107662394,LOC107582883,LOC107667757 coding upstream 127934 22568967 ~ 22575990 (+)
ppp1r9ba ppp1r9b,ppp1r9ba,LOC107740632,LOC107717206,LOC107667750,LOC107582927 coding upstream 213134 22455402 ~ 22490790 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding downstream 1257 22707994 ~ 22712057 (+)
hoxb3a hoxb3a,LOC107687775,LOC107582888,LOC107740615,LOC107717222,LOC107662380,LOC107585040 coding downstream 7136 22713873 ~ 22765536 (+)
hoxb6a hoxb6a,hoxb6,LOC107585042,LOC107662387,LOC107582892 coding downstream 12723 22719460 ~ 22721579 (+)
hoxb4a hoxb4a,LOC107740620,LOC107585041,LOC107662385,LOC107687779,LOC107582891 coding downstream 29202 22735939 ~ 22740671 (+)
hoxb1a LOC107687776,LOC107585038,LOC107717202,LOC107740618,LOC107662382,LOC107582890 coding downstream 73097 22779834 ~ 22783095 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 31013 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 613993 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 969502 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 1067354 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 1067845 21635744 ~ 21636079 (+)
G22554 ddx5,LOC107695114 non-coding downstream 233510 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 382736 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 394207 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 407541 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 689764 23396501 ~ 23400922 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 156716 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 173864 22528989 ~ 22530060 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 367697 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 678013 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 727259 21975252 ~ 21976665 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 15285 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 58910 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 192596 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 451482 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 631642 23338379 ~ 23343640 (+)

Expression


Co-expression Network