gcat (gcat,LOC107703894,LOC107670921)


Basic Information

Item Value
gene id gcat
gene name gcat,LOC107703894,LOC107670921
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24521028 ~ 24524600 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228408.1
AAATGTCTCTTCGCGCCGCCGCCCGTCTCCTCGGGGTTTTGCCGCCGTGCAGGGCGTACTCGACCGTGCCCCGGGCGCTGTCGGTGCTGGAGACCGAGCTGGAGTCTATCCGCGCGGCGGGCACGTGGAAGGAGCGGGTGATCACGTCCAAGCAGGGTCCTCATATCTACGTGGACGGCAGCGGAGGCGACATATTGAATTTCTGTGCAAACAACTACCTGGGTTTATCCAGTCACCAGGTGGTGAAGGCAGGCATAGATGCGCTGCAGAAGTATGGCGCTGGCCTTAGTTCAGTTCGCTTCATCTGTGGGACGCAGAGCATCCACAAGAACCTGGAGGAGAAACTAGCCCAGTTTCACGAAAGAGAAGACTGTATTCTATATGCGAGCTGCTTCGATGCCAACGCCGGTCTGTTTGAGGTCCTGTTGGGTCCCGATGATGCAGTGTTATCCGACGAGCTAAACCACGCCTCTATTATCGACGGCATTCGACTGTGCCGTGCCAAGAGGCTCCGCTACAAACACATGGACCTGAACGACCTGGAGGAGAAGCTGAAAGAATCACAGTCCTCCCGCCTGAGGCTGGTGGTCACGGACGGCGTGTTCTCCATGGATGGGGATGTGGCTCCTCTGCAGGGTGTCTGTGATCTGGCTGAGCAGTACGGGGCCTTGGTCTTCATTGACGAATGTCACGCCACAGGGTTCATGGGTCCCCGTGGCCGAGGAACCGATGAGCTGCTGGGAGTGATGGACAGGGTGCACATTGTGAATTCCACGCTGGGTAAAGCACTGGGAGGAGCTGCAGGTGGTTACACCGTCGGACCCAAGGCTTTGATTGAGCTTCTGAGGCAGCGCTCTCGTCCGTACCTCTTCTCCAACTCGCTCCCTCCTCCTGTGGTGGGCTGCGCCACTCGCGCTGTGGAGCTGCTGATGGCGTCCAATGAAATCGCTCAGTCCATGGCAGCTAAAACCATGAGGTTCAGAAACAACATGACCCAGGCAGGGTTCACCATTTCTGGCACCGCTCATCCCATCTGTCCCGTGATGCTGGGAGACGCTCGCCTGGCTTCACTTATGGCTGACGACATGTTAAAATTGGGAGTGTATGTGATTGGTTTCTCTGCAGTCGTTCCCAAAGGAAAGGCCCGCATTCGAGTCCAGATCTCAGCAGCTCACACTGACCAGGACATTGATCATGCCGTAGATGCCTTCATACAGACCGGCAAGAAGCACGGCGTCATTTCCTAATGTCAGAAACACAACTGACAAAGCTGTGGAGTGTAGAGTGAGGTTAAAGTTACATATCATAGCAAAAAACGATATTGCAATCAGCGAAGGTCAaagaatatttgtatattttcagtaCTGACATAAATCGCTTTCTCTATGATTAATAGTTGCTTTTTTGCAGCAGTCTCCTACACCAGCTGTATACCAAACGtgtcttgacttttttttccagctaaGACGTGTCACGTTAGCATTATAAACAAGTTTGTACAGATCAAGTTCGTGCTGCTGCTTTCCATAGGTGGGTAAAAAATAAAGAGGTTATGCCATTTAA

Function

symbol description
gcat Predicted to enable glycine C-acetyltransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process and threonine catabolic process. Predicted to be active in mitochondrion. Orthologous to human GCAT (glycine C-acetyltransferase).

NR:

description
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008890 glycine C-acetyltransferase activity molecular_function

KEGG:

id description
K00639 kbl, GCAT; glycine C-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228408.1 True 1563 mRNA 0.53 12 24521028 24524600

Neighbor

gene id symbol gene type direction distance location
LOC122341365 NA coding upstream 146464 24369213 ~ 24374564 (+)
LOC122342039 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 358786 24156356 ~ 24162242 (+)
LOC122342038 mcm5,LOC107703892,LOC107670920 coding upstream 372669 24142816 ~ 24148359 (+)
LOC122342047 gcat,LOC107703894,LOC107670921 coding upstream 378907 24138543 ~ 24142121 (+)
tom1 LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898 coding upstream 426418 24083986 ~ 24094610 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding downstream 14723 24539323 ~ 24545214 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding downstream 20811 24545411 ~ 24549093 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding downstream 24627 24549227 ~ 24557112 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding downstream 34146 24558746 ~ 24562589 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding downstream 89999 24614599 ~ 24618241 (+)
G22968 NA non-coding upstream 4030 24133726 ~ 24516998 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding upstream 71158 24268426 ~ 24449870 (+)
G22990 NA non-coding upstream 181374 24338871 ~ 24339654 (+)
G22982 NA non-coding upstream 284953 24233766 ~ 24236075 (+)
LOC122342065 NA non-coding upstream 306054 24212347 ~ 24214974 (+)
G23002 NA non-coding downstream 33111 24557711 ~ 24558261 (+)
G23005 NA non-coding downstream 38212 24562812 ~ 24563127 (+)
G23004 NA non-coding downstream 38646 24563246 ~ 24563895 (+)
G23011 NA non-coding downstream 87926 24612526 ~ 24612751 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding downstream 90567 24615167 ~ 24673712 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 71739 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 81565 24434055 ~ 24439463 (+)
G22958 NA other upstream 423869 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 469115 24039902 ~ 24051913 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other upstream 799309 23709503 ~ 23721719 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other downstream 680 24525280 ~ 24530769 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 196926 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 458681 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 822184 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 887318 25411918 ~ 25447270 (+)

Expression


Co-expression Network