raver1 (raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048)


Basic Information

Item Value
gene id raver1
gene name raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17954849 ~ 17970674 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228451.1
GGCCAAAGCAAACGAGCGAGCGAGCGCACAAACTTCCACACGGAGACATGGCGGCCGCGGTATCCGTTAGCTCAGCTGCCAGAGACGAGAAATCCCTCACTGCTGCCAACTTTGCCGCGAATCCACTCTTTAAAAGTTACGACCAAGCAGCCGAACCCGAAACCTGGAGGTTTGAACCGGCCAAACACGTTGACGCGGACACCGGTGATGAGGGTTCACCGACGGCCAGCGACTGTCCGCGACGGCTCGATGATGAACCGACGGCCCTCGGTCCAGAAGAGATTACTAGTCGTCTGGAAAGAACGAGAAGAGAGTTTTATAATCGGCGAAAAATAATTATCAAGAACCTTCCCGCCGATATCAGCAATCAGgaGGTGCATGAGCTGTTAAGTAACTATGATTTGAAGTACTGCTTTGTGGACAAATACAAAGGAACAGCCTTTGTGACACTGCTGAATGGTGAGCAGGCCCAGTTTGCGATAAAGGAGTTTCACCAATATGTTCTCCGTGACCGTGAGATCTCTGTGCAGCTGCAGCCAACGGACGCTCTGCTGTGTATCGCCAACCTTCCCAGGGCTTTCACCCAGCAACAGTTTGAGGAGCTTGTTCGCCCCTTCGGAAACATTGAGCGCTGCTTCCTGGTGCACAGTGCCAACACGGGCCACTCGAAGGGCTATGGCTTTGTGGAGTACATGAAGAAGGACTCTGCAGCCCGGGCGAAGTCAGAGCTGCTGGGGAAGCAGCTCGGGTCACGAATGCTGTATGTACACTGGACAGAGGTTGGCTCGCTCACGTTTCCCATGCTGCACTCGCGCTGCCTCTGTGTGGACCGACTACCTCAAAACATCCTCACTGCTCAGGATCTCCACAGTGTGCTAACAGACACACACGCTCCCGTTTTCTGCCAGCTTGCTCAGGGTCAGGATTGTAATTTTAGGCGGTTTGCAGTGCTAGAGTTCTCCACGCCTGAGATGGCTGAGGATGTGCAGCGACTGAACGATGGCAGAGCTCTTGGTGGCGCTCACATACGTGTGTCCTTCTGTGCCCCAGGACCACCAGGAAGAAGCATGCTAGCTGCCCTCATCGCCGCACAGACCATGGCCTTGAACAGAGGAAAAGGTCTCCTTCCTGAACCCAGCGCCATGCAGATCCTTACTGGCCTCAACAACCCTGCTACACTGAAGATGCTGCTGGCGTCCCTTAACCCAGGGCATAAACAAGGCCTGCTGGGAGCTGCGCCCGCTGTACCTCTGCTGGCAAATCCTGCCCTCTCTGCTGCCCTCATGCAGCTGCTGCTCCAGAACCAAGTCCAACAGACTGGACTGCTGAATGAAAATCCTCTCGCTGCTCTTCCTCTTCAAGGCATTAACATGTTAGGAGATATGCCTCAAGGCAATATTGCTTCAACACTGGGCTTGCAGAATGAAACTCTTGGACCCATCAAGCAACCATCCCTCAGCCGACCTCTTGGGAGAGAGAACGAGACCCCAGCCACACCGATAGGCTTTCCCCCGGCAGCCTCTCCGGCATTGCAAGGACTGAGTTTGCCCCTCTTGAGTGGGATGTTGGGAGCAGATGGGCAGACTTTAGCAGGGGCATCTATATTGGGCGAGCCTCCGAAAGAAGTTGGTGTATCCCAGAACCCTTTTCTCAGTGCTCCTAGCATATTTCCATCTTCAGGTGCCAGCACAAGGGCTCACCCCTACAGGAAGAGAGCGGCGCTTGGCAACACGTCTAACCAACGCACAAACCATGGCATCCACTCGAACTACAGCCTGCGTTTCCAGGAGTCTTGTACACCAGAGTTCTCTCTGCACCAGGACCCCTTGTCTCATTTGTATGAGCAGCAGGAGGTTCTGGAAGATGCAGCACTTGCCAGCTATGGCTTGCAGCACTCCAGGCACACAGGCTTCAGCGACGCAGGATCTCCATTCACCTACCCACCCAGCCCCCCTCAGTCCTCTTATTTCAGCTTTGGAGCCCATACAAACATCCCTTCCACCCAGCTAAATAAGgCTGTTGGAATGCCTCCAGTGACTCATTCCAGCCTATTTTCTGCTGCACCTGGCGCCGGtgtgaagACGCCGGTCGGTGGGCAGAAGCGTCTGTTCTCCCGTCTCATCCCGTCTCCAGAGCCCAGTCCAGAGGGTGGATATGTAGGTCAGCACTCTCAGGGTCTCGGGGGGCACTACGCCGACTCTTACCTGAAACGCAAGCGCATCTTTTGACTGGCACTTGGCGGCTTTCTCTGACCCACGGGCTCTGTAAAGGGATCGCTACTTAAATACCATctttaagtgtgtttttgtgtgcgtgtgtgagggTGAAAGAGCAACGAACCGTCATTGAGCTGACACCAGTGAAGCTCAGATGATCGGTGGCATGGATGATTGCtgaaggtttgtgtgtgtgtgtatataatttcaATGTGTctgtaaatagttttattattatttttgcctttttaattttgttttaatttttttttatttttctaaacccaAAGATGCAACAGACGCcacaatgaaagaaaatggtTTCCTGTCGTGTTCATCTAAATAGTCCTATTTTGtaggctgcttttttttttttttttcttctttttttaatttgtcatttaaacaGGATGATAGCCTTTTTCTGCTATGCCTCTTGTTAGTCGCGTTTGTATATAGTTGTTCAGTTTTCTAAAAAGGCTCCTCCACTACAAACACTTCCTCTCTCGAACAAGCGCCAAGCCTTACATGCTTAAATCATGTGCAACGGCTACAGTAGCTGTCCGTTTTCTTCAGTGAGTCACCTGTCTGTGTCTTTATGGGGAGCTCTGATGCTGGGTTAGTGTTAGATTTTGCTCAagtgttttctcttttctttttttttctcccccacaTGATTGTTGCACTATTTCCCATCTTTGCATCCCATTTTTACAGAGTCAGGGTTTTTTCCGAGCGTTGCACTTGGAGGATGCGGATCATGTATACCCATCCTCCAGAATCTGTCCTTTCCGCACCCGTCTCGTTCACGTTTTCTGCCTGCTTTCACACCTCTCTTTGACCTCGTTCAGCCTGCACAGTTTTGCTGTTGCGAAGCGTTAGCGCCTCGGCCATCACGTTGCGAAGCCCCAGCTGGTCAGAGATGGAGTAGGGCTGCCGTTCTCCCCTCACCAGGCTCCGAGTACTGCTCAAAGCACAGTATGCCTGCTGTCGCTTCTGTATTTCCACACACGCATTCATTCGCTCCTCACGTCGTCTTACGGTACCTTTCCTCTGCaaaccagcagagggagtcGGTTAGCTTTTCTTTTGGCACTgctccatattttttttcttttattaaaaaaaaaaaaaaaaaaaaaaaacgcacaaaaaaaaaaaagagaaactgagAGCCAACAGTCTGAAGCAGGCCGGACCTGTGCCTTAGCGTGACATTTACTTTTACCGTTGTAACTGTGACTACTTGCCCCTCTGGGTTGAACCGCTGCACCCCCGGAGGGGAAGACGCTTCTACAGACTGGAATGTGATTTGACGTATGATTGAGtacttggtgtgtgtgtgtgacttaaTAGTCTGGATGACATTTAATTTGTGATAACGCATTACCTCTGACTTGTACCGCGGCTTACGATGGAACCTGGAGTTACTTGTGTGCCTAAAaatggcagtgttcactgtaaTCTCGCCACACTGTGAGCCTCTACATttaagtttgtttatttgcGGTGTTCATGCTTGAGTTTGATTACATTTTCTTCTCTGGAGTCTTGAActcgtgtttattttttttatttattttttcttagtCTGTAATGGTATCAAAATTGCTGCTCTATATTTTGTATCCATCTGAGTGAAGTTGCACAGTGCAGTATCTTGTAAACGATTTTTCATGTGCGATAAGCGGTAAGAgcttctgctgctgtgtgaaatGAACTAAACCTTCAGATGTGGTAAATGACCTCTTCATCACcaatcactctttttttttttcttctgtacaGCTCTGTTTCTGTGGCATTTGAAcaagtaaatgttatttaagTTCA
>XM_043228458.1
TGGCCAAAGCAAACGAGCGAGCGAGCGCACAAACTTCCACACGGAGACATGGCGGCCGCGGTATCCGTTAGCTCAGCTGCCAGAGACGAGAAATCCCTCACTGCTGCCAACTTTGCCGCGAATCCACTCTTTAAAAGTTACGACCAAGCAGCCGAACCCGAAACCTGGAGGTTTGAACCGGCCAAACACGTTGACGCGGACACCGGTGATGAGGGTTCACCGACGGCCAGCGACTGTCCGCGACGGCTCGATGATGAACCGACGGCCCTCGGTCCAGAAGAGATTACTAGTCGTCTGGAAAGAACGAGAAGAGAGTTTTATAATCGGCGAAAAATAATTATCAAGAACCTTCCCGCCGATATCAGCAATCAGgaGGTGCATGAGCTGTTAAGTAACTATGATTTGAAGTACTGCTTTGTGGACAAATACAAAGGAACAGCCTTTGTGACACTGCTGAATGGTGAGCAGGCCCAGTTTGCGATAAAGGAGTTTCACCAATATGTTCTCCGTGACCGTGAGATCTCTGTGCAGCTGCAGCCAACGGACGCTCTGCTGTGTATCGCCAACCTTCCCAGGGCTTTCACCCAGCAACAGTTTGAGGAGCTTGTTCGCCCCTTCGGAAACATTGAGCGCTGCTTCCTGGTGCACAGTGCCAACACGGGCCACTCGAAGGGCTATGGCTTTGTGGAGTACATGAAGAAGGACTCTGCAGCCCGGGCGAAGTCAGAGCTGCTGGGGAAGCAGCTCGGGTCACGAATGCTGTATGTACACTGGACAGAGGTTGGCTCGCTCACGTTTCCCATGCTGCACTCGCGCTGCCTCTGTGTGGACCGACTACCTCAAAACATCCTCACTGCTCAGGATCTCCACAGTGTGCTAACAGACACACACGCTCCCGTTTTCTGCCAGCTTGCTCAGGGTCAGGATTGTAATTTTAGGCGGTTTGCAGTGCTAGAGTTCTCCACGCCTGAGATGGCTGAGGATGTGCAGCGACTGAACGATGGCAGAGCTCTTGGTGGCGCTCACATACGTGTGTCCTTCTGTGCCCCAGGACCACCAGGAAGAAGCATGCTAGCTGCCCTCATCGCCGCACAGACCATGGCCTTGAACAGAGGAAAAGGTCTCCTTCCTGAACCCAGCGCCATGCAGATCCTTACTGGCCTCAACAACCCTGCTACACTGAAGATGCTGCTGGCGTCCCTTAACCCAGGGCATAAACAAGGCCTGCTGGGAGCTGCGCCCGCTGTACCTCTGCTGGCAAATCCTGCCCTCTCTGCTGCCCTCATGCAGCTGCTGCTCCAGAACCAAGTCCAACAGCAAGCTCTTTTAGGGAATCCTCTTCTTTGGGCACACATTCTGCACAATAAAGAGTACAGTCTTCTCCCTTGTACTGGACTGCTGAATGAAAATCCTCTCGCTGCTCTTCCTCTTCAAGGCATTAACATGTTAGGAGATATGCCTCAAGGCAATATTGCTTCAACACTGGGCTTGCAGAATGAAACTCTTGGACCCATCAAGCAACCATCCCTCAGCCGACCTCTTGGGAGAGAGAACGAGACCCCAGCCACACCGATAGGCTTTCCCCCGGCAGCCTCTCCGGCATTGCAAGGACTGAGTTTGCCCCTCTTGAGTGGGATGTTGGGAGCAGATGGGCAGACTTTAGCAGGGGCATCTATATTGGGCGAGCCTCCGAAAGAAGTTGGTGTATCCCAGAACCCTTTTCTCAGTGCTCCTAGCATATTTCCATCTTCAGGTGCCAGCACAAGGGCTCACCCCTACAGGAAGAGAGCGGCGCTTGGCAACACGTCTAACCAACGCACAAACCATGGCATCCACTCGAACTACAGCCTGCGTTTCCAGGAGTCTTGTACACCAGAGTTCTCTCTGCACCAGGACCCCTTGTCTCATTTGTATGAGCAGCAGGAGGTTCTGGAAGATGCAGCACTTGCCAGCTATGGCTTGCAGCACTCCAGGCACACAGGCTTCAGCGACGCAGGATCTCCATTCACCTACCCACCCAGCCCCCCTCAGTCCTCTTATTTCAGCTTTGGAGCCCATACAAACATCCCTTCCACCCAGCTAAATAAGgCTGTTGGAATGCCTCCAGTGACTCATTCCAGCCTATTTTCTGCTGCACCTGGCGCCGGtgtgaagACGCCGGTCGGTGGGCAGAAGCGTCTGTTCTCCCGTCTCATCCCGTCTCCAGAGCCCAGTCCAGAGGGTGGATATGTAGGTCAGCACTCTCAGGGTCTCGGGGGGCACTACGCCGACTCTTACCTGAAACGCAAGCGCATCTTTTGACTGGCACTTGGCGGCTTTCTCTGACCCACGGGCTCTGTAAAGGGATCGCTACTTAAATACCATctttaagtgtgtttttgtgtgcgtgtgtgagggTGAAAGAGCAACGAACCGTCATTGAGCTGACACCAGTGAAGCTCAGATGATCGGTGGCATGGATGATTGCtgaaggtttgtgtgtgtgtgtatataatttcaATGTGTctgtaaatagttttattattatttttgcctttttaattttgttttaatttttttttatttttctaaacccaAAGATGCAACAGACGCcacaatgaaagaaaatggtTTCCTGTCGTGTTCATCTAAATAGTCCTATTTTGtaggctgcttttttttttttttttcttctttttttaatttgtcatttaaacaGGATGATAGCCTTTTTCTGCTATGCCTCTTGTTAGTCGCGTTTGTATATAGTTGTTCAGTTTTCTAAAAAGGCTCCTCCACTACAAACACTTCCTCTCTCGAACAAGCGCCAAGCCTTACATGCTTAAATCATGTGCAACGGCTACAGTAGCTGTCCGTTTTCTTCAGTGAGTCACCTGTCTGTGTCTTTATGGGGAGCTCTGATGCTGGGTTAGTGTTAGATTTTGCTCAagtgttttctcttttctttttttttctcccccacaTGATTGTTGCACTATTTCCCATCTTTGCATCCCATTTTTACAGAGTCAGGGTTTTTTCCGAGCGTTGCACTTGGAGGATGCGGATCATGTATACCCATCCTCCAGAATCTGTCCTTTCCGCACCCGTCTCGTTCACGTTTTCTGCCTGCTTTCACACCTCTCTTTGACCTCGTTCAGCCTGCACAGTTTTGCTGTTGCGAAGCGTTAGCGCCTCGGCCATCACGTTGCGAAGCCCCAGCTGGTCAGAGATGGAGTAGGGCTGCCGTTCTCCCCTCACCAGGCTCCGAGTACTGCTCAAAGCACAGTATGCCTGCTGTCGCTTCTGTATTTCCACACACGCATTCATTCGCTCCTCACGTCGTCTTACGGTACCTTTCCTCTGCaaaccagcagagggagtcGGTTAGCTTTTCTTTTGGCACTgctccatattttttttcttttattaaaaaaaaaaaaaaaaaaaaaaaacgcacaaaaaaaaaaaagagaaactgagAGCCAACAGTCTGAAGCAGGCCGGACCTGTGCCTTAGCGTGACATTTACTTTTACCGTTGTAACTGTGACTACTTGCCCCTCTGGGTTGAACCGCTGCACCCCCGGAGGGGAAGACGCTTCTACAGACTGGAATGTGATTTGACGTATGATTGAGtacttggtgtgtgtgtgtgacttaaTAGTCTGGATGACATTTAATTTGTGATAACGCATTACCTCTGACTTGTACCGCGGCTTACGATGGAACCTGGAGTTACTTGTGTGCCTAAAaatggcagtgttcactgtaaTCTCGCCACACTGTGAGCCTCTACATttaagtttgtttatttgcGGTGTTCATGCTTGAGTTTGATTACATTTTCTTCTCTGGAGTCTTGAActcgtgtttattttttttatttattttttcttagtCTGTAATGGTATCAAAATTGCTGCTCTATATTTTGTATCCATCTGAGTGAAGTTGCACAGTGCAGTATCTTGTAAACGATTTTTCATGTGCGATAAGCGGTAAGAgcttctgctgctgtgtgaaatGAACTAAACCTTCAGATGTGGTAAATGACCTCTTCATCACcaatcactctttttttttttcttctgtacaGCTCTGTTTCTGTGGCATTTGAAcaagtaaatgttatttaagTTCA

Function

symbol description
raver1 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to human RAVER1 (ribonucleoprotein, PTB binding 1).

NR:

description
PREDICTED: ribonucleoprotein PTB-binding 1-like

GO: NA

KEGG:

id description
K24999 RAVER1; ribonucleoprotein PTB-binding 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228451.1 False 4049 mRNA 0.49 14 17954850 17970674
XM_043228458.1 True 4122 mRNA 0.49 15 17954849 17970674

Neighbor

gene id symbol gene type direction distance location
tyk2 tyk2,LOC107703360,LOC107587917,LOC107674650,LOC107596804 coding upstream 517 17931705 ~ 17954332 (+)
unkl unkl,LOC107550311,LOC107674636,LOC107565763,LOC107710649,LOC107703366,LOC106601098 coding upstream 239227 17691906 ~ 17715622 (+)
gper1 LOC107703333,LOC107710646,LOC107579847,LOC107719188,LOC107565760,LOC107674622 coding upstream 269154 17679275 ~ 17685695 (+)
gpr146 LOC107565765,LOC107710650,LOC107674685,LOC107703371,LOC107550312,LOC107719180 coding upstream 286157 17658434 ~ 17668692 (+)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767,LOC107749910 coding upstream 332628 17578740 ~ 17622221 (+)
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding downstream 9548 17980222 ~ 18026132 (+)
dnase1 dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635 coding downstream 62038 18032712 ~ 18035362 (+)
c3h16orf72 zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273 coding downstream 154320 18124994 ~ 18129811 (+)
atf7ip2 LOC107690257,LOC107733857 coding downstream 402083 18372757 ~ 18378482 (+)
ciita LOC107567931,LOC107733851,LOC107690261 coding downstream 455686 18426360 ~ 18437883 (+)
G20994 NA non-coding upstream 91768 17862067 ~ 17863081 (+)
G20951 h3f3b,H3F3A,LOC105909691,LOC101073377,LOC107388308,LOC102790198,LOC107572204,LOC106578873 non-coding upstream 264561 17689415 ~ 17690288 (+)
G20953 NA non-coding upstream 303548 17650767 ~ 17651301 (+)
G20927 NA non-coding upstream 382376 17572130 ~ 17572473 (+)
G20915 LOC107550314,LOC107703374,LOC107719177,LOC107565769,LOC107741796 non-coding upstream 391485 17553374 ~ 17563364 (+)
G21045 NA non-coding downstream 9493 17980167 ~ 18067318 (+)
G21049 NA non-coding downstream 64865 18035539 ~ 18042621 (+)
G21050 NA non-coding downstream 67887 18038561 ~ 18041682 (+)
G21073 NA non-coding downstream 145864 18116538 ~ 18119426 (+)
G21076 NA non-coding downstream 187497 18158171 ~ 18158546 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 25215 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 48206 17904584 ~ 17906643 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other upstream 53358 17870177 ~ 17901491 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other upstream 231426 17719182 ~ 17723423 (+)
LOC122341316 NA other upstream 754219 17137930 ~ 17200630 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other downstream 103401 18074075 ~ 18075616 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other downstream 126971 18097645 ~ 18101933 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other downstream 435292 18405966 ~ 18425076 (+)
G21124 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693 other downstream 472716 18443390 ~ 18843419 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 711680 18682354 ~ 18687853 (+)

Expression


Co-expression Network