hbae1.1 (hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026)


Basic Information

Item Value
gene id hbae1.1
gene name hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9791542 ~ 9792514 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228481.1
ATTCAAATGGTATTTCacttaattaaagaaaaaatgtgccAATGAGTGAAATGTGAGGACAGGATTTgactaattgaaaataaaatggagaGGAAAGAACGTAGCCTATaggagaaaaagaagaacattCTGTCAATCTTGCACGGTCTGATAAGTGATCGTTGGGGGTGAGAGGAGGGTCTTGGGTGGATCTTCCTGGTGGGACTATAAAACCACCAGACCTCTTGCCAGAAGCCCACAGAAGTTTGCTGCAAAGTCATCCTTCCACGATGAGTCTCACTGCCAAAGACAAAGCTGCCGTCAAAGACCTTTGGGCCAAGATCTCAGGAAAGGCTGATGACATCGGCAATGATGCTCTTTCTAGGATGTTGGTGGTCTACCCCCAGACCAAAACCTATTTCTCTCACTGGAAGGACCTGAGCCCCGGCTCTGCCCCAGTGAGGAAGCACGGGAAGACTGTGATGGGCGGCGTCGCTGAGGCTGTCAGCAAAATCGATGACCTTACCGCTGGACTCCTGAACCTCAGCGAGCTTCACGCTTTCCAGCTGCGTATTGACCCCGCCAACTTCAAGaTTCTGTCCCACAACATCCTCGTGGTTCTGGCCACTCTGTTCCCCGTCGATTTCACTCCAGAGGCCCATGTTGCTATGGACAAGTTCCTCAGTGCTCTGTCTCTGGCTCTGTCCGAGAAGTACAGATAAGATGTTACTGTCTTCAAGTCGGACTGCGTCAGACCAGATGGATGCCTGTATAAACACTCTGTCTTATTGTGATGCAATAAATTGCTATAAAA

Function

NR:

description
PREDICTED: hemoglobin embryonic subunit alpha-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13826 HBZ; hemoglobin subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228481.1 True 793 mRNA 0.48 3 9791542 9792514

Neighbor

gene id symbol gene type direction distance location
hbba1 ba2,ba1 coding downstream 7117 9783631 ~ 9784425 (-)
hbba2 zgc:92880,LOC107754031,LOC107711188,LOC107587925,LOC107596824,LOC107672461 coding downstream 14109 9776674 ~ 9777433 (-)
nprl3 LOC107711278,LOC107596811,LOC107754028,LOC107670498,LOC107672508 coding downstream 17267 9761330 ~ 9774275 (-)
rhbdf1a rhbdf1a,LOC107587928,LOC107711277,LOC107596807,LOC107672493,LOC107754036,LOC107670513 coding downstream 51385 9698064 ~ 9740157 (-)
ubald1b ubald1b,LOC107754052,LOC107672511,LOC107670507,LOC107596822,LOC107587929 coding downstream 112591 9675218 ~ 9678951 (-)
LOC122331237 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 2191 9794705 ~ 9795658 (-)
LOC122341747 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 5485 9797999 ~ 9798799 (-)
LOC122341755 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 8767 9801281 ~ 9802091 (-)
hbae3 hbae3,LOC107674645,LOC107588003,LOC107703327 coding upstream 15538 9808052 ~ 9809328 (-)
kank2 kank2,LOC107703353,LOC107674641,LOC107596805,LOC107587974,LOC107754027 coding upstream 18679 9811193 ~ 9832217 (-)
G18628 hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926 non-coding downstream 5418 9785249 ~ 9786124 (-)
G18623 NA non-coding downstream 38020 9753235 ~ 9753522 (-)
G18608 NA non-coding downstream 144976 9646313 ~ 9646566 (-)
G18602 NA non-coding downstream 200251 9589921 ~ 9591291 (-)
G18599 NA non-coding downstream 219737 9571600 ~ 9571805 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding upstream 109017 9901531 ~ 9908617 (-)
G18717 NA non-coding upstream 609319 10401833 ~ 10402211 (-)
G18745 NA non-coding upstream 781653 10574167 ~ 10579140 (-)
G18771 NA non-coding upstream 884943 10677457 ~ 10678580 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding upstream 896650 10689164 ~ 10697539 (-)
G18433 LOC107670519,LOC107563315 other downstream 328637 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 653453 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 784099 8992714 ~ 9007443 (-)
fmc1 NA other downstream 1392714 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 1572487 8218902 ~ 8219055 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 201319 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 601800 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1219422 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 1619471 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1901758 11694272 ~ 11714719 (-)

Expression


Co-expression Network