LOC122331080 (emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994)


Basic Information

Item Value
gene id LOC122331080
gene name emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8498732 ~ 8502673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228534.1
GGGGCGGGCGGGGGAGTGGCCAAGGGCTGATAGCTCACTGTAAAGATCCAGTCTCAAACGCACATCACATCTGGAGTGTAAAGCTGCTCTCGTCTAGCGATCTGACTTCTTTTCCTCCGCAGTCATGCTGGTTTTACTCGCTGCCATCTTCCTTCTCCACATCGCCTGCATCTGTCTGCTGCTGGCCGCCACCAGCCACAACgcctGGTGGATGACCGACAGCATGTCCACTGATATCTGGTCTCGCTGGGTTCTGGTTAATGGAAACTGGAACTACACCGATATTCCTGCTCACTATCCTAAAGAGTATCTTCAGGCGGTTCAAGCCAGTTCAGTGCTGGCCTGCATCTTCTGCATCCTGGGCCTGTTTGTGTTCGTCGCTCAGCTCTACACACTTCCTAAAGGAAAGCGCTTCCTGTTCACCGGAGCCTTCCAGCTGCTGGCCTGGCTGTGCATCATGATCGCGGCCTCCATCTACACAGACATCTTCCACAGAGACAACGAACAGGGCTGGTACGGAGCCTCCTTCATCCTGGCCTGGATCTCCGTCTGCCTCACCTTCATCTCCTGCATCACCTACTTCATCCTGCGCAAGAAGACGGCGTGAAgaacacactcactctcacacacacacacacacacacacgctgtctcTGATCTCAGAACTGCTCAGGTCGGTCTCCAGCGGCTCAAAGCCTCATATCTTACTCATTATATCCAGCTGAATGTAATCTCAGAGACTCCGTGTCGTTGTAAAGGTCATGTTTTCACTGTAGTCTGTCTCTAGTGGTTGGTTTGGGCTGTCTAACGCTCGTCCTTCTCTTGCGTTCTCTACTAACCTTCTGTTCTGCGTTTCCTGAAAGGATCACGAGCTGATCGTAACTCTGTCTGTGATCAGTCTGCCATGCTTTCGGAAACGCAGCCCTCATCCTCCCAGCAGCGCACTGCAAAAATATCCTTACCGTTTCAACACGAGACACTAGTTTGATTGTTAggatgttgctttttttaatgaaatccctTCACAGTTCAGAAACCAACAAAGTGCACTGAGTTGGCAATTATCCTTTGTTTTAGTGATCAAGTCTGtgcataatttaaaacactctgaaagacaaaagatttttttttttaatataaatgagtgaatgaatgaatgaa

Function

symbol description
emp1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human EMP1 (epithelial membrane protein 1).

NR:

description
PREDICTED: epithelial membrane protein 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228534.1 True 1161 mRNA 0.49 5 8498732 8502673

Neighbor

gene id symbol gene type direction distance location
LOC122329328 hebp1,LOC107670539,LOC107661078 coding downstream 110042 8385064 ~ 8388690 (-)
LOC122341283 hebp1,LOC107670539,LOC107661078 coding downstream 192739 8302071 ~ 8305993 (-)
LOC122331822 NA coding downstream 241519 8234899 ~ 8257213 (-)
LOC122334091 NA coding downstream 320737 8174036 ~ 8177995 (-)
irgf4 NA coding downstream 377703 8109057 ~ 8121029 (-)
zgc:65811 LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523 coding upstream 10740 8513413 ~ 8524779 (-)
LOC122341497 NA coding upstream 28153 8530826 ~ 8535042 (-)
pde6hb LOC107724721 coding upstream 32438 8535111 ~ 8537581 (-)
LOC122330990 LOC107656950 coding upstream 209805 8712478 ~ 8714195 (-)
LOC122341290 LOC107725336,LOC107573036,LOC107698059,LOC107758357,LOC108425688,LOC107661082,LOC107676879 coding upstream 303015 8805688 ~ 8829491 (-)
G18196 NA non-coding downstream 1725 8495916 ~ 8497007 (-)
LOC122333427 NA non-coding downstream 77100 8421202 ~ 8421632 (-)
G18183 NA non-coding downstream 94160 8401630 ~ 8404572 (-)
G18155 NA non-coding downstream 109101 8306724 ~ 8389631 (-)
G18129 fam234b,LOC107714892,LOC107721680,LOC107576065 non-coding downstream 115121 8300414 ~ 8383611 (-)
G18225 NA non-coding upstream 72638 8575311 ~ 8575731 (-)
G18228 NA non-coding upstream 114452 8617125 ~ 8617674 (-)
LOC122341612 NA non-coding upstream 264782 8767455 ~ 8773405 (-)
G18273 NA non-coding upstream 499464 9002137 ~ 9002412 (-)
LOC122342131 NA non-coding upstream 504940 9007613 ~ 9007999 (-)
fmc1 NA other downstream 99904 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 279677 8218902 ~ 8219055 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other downstream 280644 8054039 ~ 8218088 (-)
LOC122339740 NA other downstream 289639 8207698 ~ 8209093 (-)
LOC122334075 NA other downstream 327071 8058631 ~ 8171661 (-)
zgc:113210 NA other upstream 490041 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 631370 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 923899 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 1491160 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1891641 10394314 ~ 10396341 (-)

Expression


Co-expression Network