LOC122331179 (LOC107550260,LOC107659569)


Basic Information

Item Value
gene id LOC122331179
gene name LOC107550260,LOC107659569
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5551196 ~ 5556139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228696.1
AAGTAAATTACATAACAGCGTTTGAGGAGACTGATGGGGAAGAGTCAGCTCGGTCAAAACTCCCTTTTGTGATATTTAACGCGGGAATTTTAACGACACGGGAATCGAATCGCtacgaaagaaaaaaatatccctCCGAGCAGAAAAGTTCAAGATTTTCTCTGTATAAGACTTAAGGACACCGAACCAAAAACAATATGGAGCAGCTGGATGCTGAGTTTGTGGATCATTACAGTCCCCAGCTCGTCCAAAGGACTACTGTTGTCATGCCCATTGCTGATTCACTGAAAGCCGCTCAAATAATTCACAACGAAACATACTCAGATATTTTTGCAGCCTCTACAACTATGGCTAAAATGAGAGTGCTACTGAGCGCTCTGAACGACAACAAAGCGAAATCTGCTTTTTATCATTTGCTCAAAGTTAACCAGTTGTTACTGGTTGAAGATCTTAAACGagaagTGGCAGGGGAATCTGCACAGACCTCATCAGGAGTACTGGAAACTGAAGCTCATCCCCAAAATGCTACAGTAGAGATGGAGGATATCCAACAGGGGACTGAAGACCAACAGATCACCTGGTGGAACAGAGACAGATCTCGTACGAGACATAGTACAACGATAGAGAACCTGTTAAGAAAGACTGACAAACAAAAAGTAGGGAAGCTCTACTTTTATAAAGATGAGAAGTGCATGCTTGGCTCTGGAGGAAGTGGCACGCAAGTGTATATCGGTGTGCGTGAAGACGGCTTTGAGGTGGCCGTTAAAATAATAACCAAGAACCCGAAGACCATCAAGGACTTTAAAAATCGAACTGAGTCATTTACAAGATTCAAAGCTTGAAAGCCCACATACCGTCAGGTATGTGACCTTTGAAGAAGACAGAGATTTTTACTATCTGGCAAACCAGCTTTGTGAATATGATCTGGTGGGCTACATGGATTATCTTCGTCAGCCGGAGCAAAAGGACAGAAAAGAGACCACTTTGAGGAGAATAGTGAAGGAGATGCTCCTTGGCCTTCAGGTTCTCCACCGCGCCGGAGTGGTCCACCGTGATATAAAGCCTAGAAATGTTTTGATagACAAAGAAGAAAGGGCAAGGCTGGCAGACTTCGGCATAAGTCGCAAACTGGAGGAGGGGAAAACCACAGTGTATACTGACAGAGCCGGCACACAAGGCTGGGAGGCAACGGAGATTATAAATCAGAAAGACAAAAGCTCATACAAAATGAGCTCAGACATCCAGGTCGCAGGGATGTTAACCTGTTACATCCTCTTTGACGGGAAACATCCGTTTGGTGAAGGCATTTACCTTGAGCCGAACATTTCGGAAGGGAAATACAACACCACAGATATCACGAATGAGGCCGCAAAGGATCTCATAGAGTGGATGATTAACAAAAATCAAGATGACAGGCCGACTATCGATCAGGTCCTAAATCACCCTTATTTCTGGGATGATAAACGaaaagaaGACACGCTGAAAAAACTGGGCGATCGACCTGAAGTCCAGCACTatagtgatattttaaaagtttgtaaAACGAAGGAAGCTGAGGTACGTCTAACAGCAAGAGAAGCTGTAGAAAAGACCTTCACTGataaaaaggacaaaagcaGgaAAACTGCAGTCCTTGCCATATTAGGAGAAACGGAGGAGGCACAGAAACTGAAGTTAGAAAGTCTTCTTAAGCTGTGCGACAAAGCAAAGGAAGCCACAAAAGACAAATCGTTTAGTAACTGGAAATCAACGCTTTCAGGCAAAGGCATCAGTTTTGACAACAATTTTCCGGAGGACATATTTGGCCTGCTGCGTACTTACCGCAACACACTGATACATGGGGTGCTCCGAGAAGATATGTTAGACTGTTTTTCGGACTTCTACGTCAGCTTGCACAGATTGGCTATGGACGTGGACTGGGACTGTAACTGATGGAGAACGTGGGCAAGCGTTGTGAGCGCCAGGACAGAAGTAGCGATAGATGCTACcggcaaaaagaaaaagttagcatttttatttcctaGAAATTCACTTAACAGTAAGGCACAGGATGCATCATGCATTTGTGGTGTGTTtcatttataactttttatcatgtaatcattttattattcaatttaatcGTTTATAATAATGGCTATAGTCATTTATCTACCTAGTTCATTGAGTCCCTAATTGATTGAAAACGCTGGGTTCAGGAGATGATTTTGTGGAACGGTTTGGTATAATGTTGAAGTCTGAGCATTAAAACATTGCAACTAAGATTGTTCAATAAACCTTTGATAATC

Function

NR:

description
PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228696.1 True 2288 mRNA 0.43 10 5551196 5556139

Neighbor

gene id symbol gene type direction distance location
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding upstream 138063 5409599 ~ 5413133 (+)
swsap1 LOC107550247 coding upstream 268875 5280179 ~ 5282321 (+)
gadd45gip1 LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245 coding upstream 309870 5239573 ~ 5241326 (+)
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding upstream 559802 4987440 ~ 4991394 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding upstream 567458 4963561 ~ 4983738 (+)
LOC122331145 NA coding downstream 10426 5566565 ~ 5574214 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding downstream 18262 5574401 ~ 5580741 (+)
tufm tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188 coding downstream 260904 5817043 ~ 5821892 (+)
amdhd2 amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757 coding downstream 369090 5925229 ~ 5933647 (+)
slc25a19 slc25a19,LOC107661860,LOC107563233,LOC107565621,LOC107653449,LOC107718625 coding downstream 381293 5937432 ~ 5942586 (+)
G17115 NA non-coding upstream 33332 5450539 ~ 5517864 (+)
G17112 NA non-coding upstream 145033 5405770 ~ 5406163 (+)
G17056 NA non-coding upstream 293444 5254500 ~ 5257752 (+)
G17061 NA non-coding upstream 330824 5219650 ~ 5220372 (+)
LOC122341773 NA non-coding upstream 339503 5207244 ~ 5211693 (+)
G17300 NA non-coding downstream 37847 5593986 ~ 5594547 (+)
G17315 NA non-coding downstream 91106 5647245 ~ 5648079 (+)
G17322 NA non-coding downstream 134396 5690535 ~ 5695636 (+)
G17312 LOC107550264,LOC107659563,LOC107653452,LOC107563254,LOC107718634 non-coding downstream 178950 5735089 ~ 5737125 (+)
G17337 NA non-coding downstream 195842 5751981 ~ 5752280 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other upstream 70589 5415758 ~ 5480607 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other upstream 238825 5310493 ~ 5312371 (+)
G16981 NA other upstream 644230 4905656 ~ 4906966 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 1004629 4470732 ~ 4546567 (+)
G16979 NA other upstream 1088922 4458698 ~ 4462274 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 869 5557008 ~ 5565974 (+)
G17302 NA other downstream 40960 5597099 ~ 5598232 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 401264 5957403 ~ 5962888 (+)
fbxw9 fbxw9,LOC107661857 other downstream 542062 6098201 ~ 6103626 (+)
LOC122341437 LOC107718607,LOC107653460 other downstream 630669 6186808 ~ 6195038 (+)

Expression


Co-expression Network