sgf29 (sgf29)


Basic Information

Item Value
gene id sgf29
gene name sgf29
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20522868 ~ 20526632 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228904.1
GCGCGCGGAGGGTGTGATCTGAGCTCCGTCCAGTCAATGGCGCTCTGTTGTGTTTGTGGATTCGAGCTACATAAATAACACCTAAACCTCAATGCATTACTATTAGAACTATTGCATTATGATACTGTTGCTTTAGTTTGTGCAATGTTAGTGGTGCCGTTTACTTTTATCTgTACAATGGCTTTAGTGTCAGCAGACACCAAAATCGCAGAGTTGCTGAACGAGTTGCATCAGCTCATCAAGCAAACACAGGAAGAGCGATCAAGAAGTGAACATAACCTTCTCAACATCCAGAAAACACATGAACGGATGCAGACCGAGAATAAGACTTCGCCATATTATCGGACAAAACTGAGAGGTCTTTACACTACAGCTAAAGCTGATGCTGAGGCTGAATGTGGTATACTTCGCCGGGCGCTCGATAAGATTGCCGAAATTAAATCCCTTTTGGAGGAGAGACGGATTGCTGCAAGGATGGCAGGAGTGTACAGCGACACGGACCCACCCAGAAAGACCATGCGCAGAGGGGTCCTGATGACCCTGTTACAACAGTCAGCCATGACACTTCCTCTCTGGATCGGCAAACCGGGGGAGAGTCCACCACCATTGTGTGGCGCTATACCAGCGAGCAGTGACTATGTGGCTAAGCAGGGAGACAAGGTGGCGGCGCGCATCAAAGCTGTGGATGGGGATGAGCAGTGGATTCTTGCAGAAGTAGTCAGCTACAATCACTCCACCAACAAgtaTGAAGTGGATGACATTGATGAAGAGGGTAAAGAGAGACACACGTTGAGTCGTAGGAGAATAATTCCTCTTCCTCAGTGGAAAGCAAACCCAGAGACTGACCCGGAGGCCCTGTTCAGTAAGGATCAGCTGGTGCTGGCCCTCTATCCACAGACCACGTGCTTTTACAGAGCTCTGATCCACACGCCGCCGCATCGGCCCCAGGATGACTACTCGGTTCTGTTTGAGGATACATCTTATGCTGATGGCTATTCTCCACCTCTCAACGTCGCTCAGCGATATGTAGTGGCCTGCAAGGAGAACAAAAAGAAGTGACAGATAAATACAATATGGGACATTTTTGGCAAAAAGATCCTGCATGATTGTTGTGATTGAAAACAGCATATTGAGCATcgatttgtgatttttctccattttgCGTTATCATGTATATAGTATTGGTATATTTTATACTGCgtcttttgtatgtttttgtgaatCTGAATATAAAGAGACCAACTGCAAGTGAATTGGGCTAAAGTAGAAAAACCCTTTATATGTGAATTAAAGGTACACAAATCATA
>XM_043228906.1
AAACACGCCATGAAGTTTGTCCCTTCAACGTGTCCGTACGAGGCCTAGCTCTACGGCTAACCAATCAATGCAAAGGGAAAACAAATTCTAAAATACGTTAAGGAAAGCGAAACTGTGATCGATGAATGTTTTGGGTTTAGAGTTCGTGTATTAATGCGTGAGGTGCATCTCGAGAGCATCGCGCAGCTGTGTGTTTGAAGgTACAATGGCTTTAGTGTCAGCAGACACCAAAATCGCAGAGTTGCTGAACGAGTTGCATCAGCTCATCAAGCAAACACAGGAAGAGCGATCAAGAAGTGAACATAACCTTCTCAACATCCAGAAAACACATGAACGGATGCAGACCGAGAATAAGACTTCGCCATATTATCGGACAAAACTGAGAGGTCTTTACACTACAGCTAAAGCTGATGCTGAGGCTGAATGTGGTATACTTCGCCGGGCGCTCGATAAGATTGCCGAAATTAAATCCCTTTTGGAGGAGAGACGGATTGCTGCAAGGATGGCAGGAGTGTACAGCGACACGGACCCACCCAGAAAGACCATGCGCAGAGGGGTCCTGATGACCCTGTTACAACAGTCAGCCATGACACTTCCTCTCTGGATCGGCAAACCGGGGGAGAGTCCACCACCATTGTGTGGCGCTATACCAGCGAGCAGTGACTATGTGGCTAAGCAGGGAGACAAGGTGGCGGCGCGCATCAAAGCTGTGGATGGGGATGAGCAGTGGATTCTTGCAGAAGTAGTCAGCTACAATCACTCCACCAACAAgtaTGAAGTGGATGACATTGATGAAGAGGGTAAAGAGAGACACACGTTGAGTCGTAGGAGAATAATTCCTCTTCCTCAGTGGAAAGCAAACCCAGAGACTGACCCGGAGGCCCTGTTCAGTAAGGATCAGCTGGTGCTGGCCCTCTATCCACAGACCACGTGCTTTTACAGAGCTCTGATCCACACGCCGCCGCATCGGCCCCAGGATGACTACTCGGTTCTGTTTGAGGATACATCTTATGCTGATGGCTATTCTCCACCTCTCAACGTCGCTCAGCGATATGTAGTGGCCTGCAAGGAGAACAAAAAGAAGTGACAGATAAATACAATATGGGACATTTTTGGCAAAAAGATCCTGCATGATTGTTGTGATTGAAAACAGCATATTGAGCATcgatttgtgatttttctccattttgCGTTATCATGTATATAGTATTGGTATATTTTATACTGCgtcttttgtatgtttttgtgaatCTGAATATAAAGAGACCAACTGCAAGTGAATTGGGCTAAAGTAGAAAAACCCTTTATATGTGAATTAAAGGTACACAAATCATA

Function

symbol description
sgf29 Predicted to enable methylated histone binding activity. Predicted to be involved in histone H3 acetylation. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human SGF29 (SAGA complex associated factor 29).

NR:

description
PREDICTED: SAGA-associated factor 29 homolog

GO: NA

KEGG:

id description
K11364 SGF29; SAGA-associated factor 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228904.1 False 1307 mRNA 0.46 10 20523100 20526632
XM_043228906.1 True 1335 mRNA 0.46 10 20522868 20526632

Neighbor

gene id symbol gene type direction distance location
LOC122342097 LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406 coding upstream 40131 20478686 ~ 20482737 (+)
si:dkey-93n13.2 LOC107754579,LOC107567217,LOC107661267,LOC107689100,LOC107739413,LOC107552446 coding upstream 45635 20474185 ~ 20477233 (+)
LOC122341263 LOC107689064 coding upstream 49457 20470981 ~ 20473411 (+)
zgc:66474 LOC107754539,LOC107567164,LOC107660968 coding upstream 53022 20461375 ~ 20469846 (+)
zgc:66443 LOC107567227,LOC107754585,LOC107660992,LOC107552485,LOC107689065,LOC107739396 coding upstream 62517 20457138 ~ 20460351 (+)
LOC122341343 spns1,LOC107552478,LOC107754623,LOC107689070,LOC107739389,LOC107660866,LOC107567150 coding downstream 1419 20528051 ~ 20541188 (+)
lat LOC107567139,LOC107755157 coding downstream 14698 20541330 ~ 20548973 (+)
LOC122341935 LOC107687002 coding downstream 47641 20574273 ~ 20577034 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding downstream 51148 20577780 ~ 20584896 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding downstream 76982 20603614 ~ 20616947 (+)
G21687 NA non-coding upstream 4830 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 114541 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 128967 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 177512 20339891 ~ 20345356 (+)
G21661 NA non-coding upstream 180572 20341072 ~ 20342296 (+)
LOC122337901 NA non-coding downstream 193941 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 196826 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 211345 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 244025 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 244492 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 327147 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 409370 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 453615 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1119692 19399408 ~ 19403176 (+)
G21213 NA other upstream 1230527 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 355566 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 769070 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1111111 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1448620 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1449877 21976509 ~ 22025911 (+)

Expression


Co-expression Network