nme3 (nme3,LOC107661191,LOC107689099,LOC107567334)


Basic Information

Item Value
gene id nme3
gene name nme3,LOC107661191,LOC107689099,LOC107567334
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20331334 ~ 20334050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229006.1
TGCCTGCGCGGTGCTCACACGTGATTGGTCAGTTGGTGCGCCGTTCCGCGCGAGACTGCCGCGCGCGTAATAATGGGCTCTAAAAGGTCGTTGTCTGACACAAAGGAAGTCGAGGATTTAGAGGCAAAACACGCCAGGATCGTTGAGTCAGGATGGACCGGCACAAACGAGCGCACCTTCATCGCAGTGAAGCCAGACGGAGTTCAGCGGAGACTGGTCGGTGAAATCATCCGGCGCTTCGAGCGCAAGGGTTTCAAACTGGTCGGCATGAAGCTCCTGCAGGCATCAGAGGAGCAGCTCAGAGAGCACTACCGGGACCTGAGGGAGAAGCCCTTCTACAGCGGCTTGGTCAGATACATGAGCTCTGGACCCATTGTTGCAATGGTATGGCAGGGGCTGGATGTGGTCAAGACCGCCAGGAAGATGCTTGGAGAGACGAACCCCGCAGACTCTCTCCCAGGCACTATCAGAGGAGACTATTGTGTTGAAGTGGGCAGGAACGTGATTCACGGCAGTGATTCAGTCGAAAGTGCTCAGAGAGAGATTTCGCTGTGGTTCAAGCATCACGAGTTGTTCTGCTGGGAGGAGTGTAGTGAACACTGGATCTATGCTTGAAGCCCATCATATAACACTCACGCAGTCTTCATTAAGTACAGCTTCTCTCTGCTCAAGCCATAAAgtgaccaaaaaaataaaaaaaggattaGCTAGTTATTGGTCAAGCTATCTTGAATGTAATGGTTTTCTGATGGCTTCCTTTGCGAATGTGTAATCTTCAGAGATATTCACTTCATCACTAATCTTTGGTCGGTTGGTAAGTCATGCACTACTTTGAGTTGTTTACATCCACTTGAAAgatgttgtttacatttttacctCCAACTTTTGATATGGAAATGCTTCTTGTCATCTTGATGCACTCtgtaaaatacatgtattaatCATGACTCAAAAGGAaagcaataataaatgattGAGCCAGCATGCTCTGATAAAACCTAATATGAACATCCTAGCAATGCTTTGTCTTACTCTAGTGCTTGGAACTCAGTTGACCAAAGGGCGCCttactttacaaataaattatttctttgttga
>XM_043229013.1
CGTCACCTAGCGACAGCCGTGGGCGCGCGCACGCgtctcttccctctctctcccgaAACTCTTGAGGCAGCCGGCGCCTCGGACCGCGAAGATGATCATACTTTGCTTAACGATATTTGCGAACGTTTTCAAGACGGGATGGACCGGCACAAACGAGCGCACCTTCATCGCAGTGAAGCCAGACGGAGTTCAGCGGAGACTGGTCGGTGAAATCATCCGGCGCTTCGAGCGCAAGGGTTTCAAACTGGTCGGCATGAAGCTCCTGCAGGCATCAGAGGAGCAGCTCAGAGAGCACTACCGGGACCTGAGGGAGAAGCCCTTCTACAGCGGCTTGGTCAGATACATGAGCTCTGGACCCATTGTTGCAATGGTATGGCAGGGGCTGGATGTGGTCAAGACCGCCAGGAAGATGCTTGGAGAGACGAACCCCGCAGACTCTCTCCCAGGCACTATCAGAGGAGACTATTGTGTTGAAGTGGGCAGGAACGTGATTCACGGCAGTGATTCAGTCGAAAGTGCTCAGAGAGAGATTTCGCTGTGGTTCAAGCATCACGAGTTGTTCTGCTGGGAGGAGTGTAGTGAACACTGGATCTATGCTTGAAGCCCATCATATAACACTCACGCAGTCTTCATTAAGTACAGCTTCTCTCTGCTCAAGCCATAAAgtgaccaaaaaaataaaaaaaggattaGCTAGTTATTGGTCAAGCTATCTTGAATGTAATGGTTTTCTGATGGCTTCCTTTGCGAATGTGTAATCTTCAGAGATATTCACTTCATCACTAATCTTTGGTCGGTTGGTAAGTCATGCACTACTTTGAGTTGTTTACATCCACTTGAAAgatgttgtttacatttttacctCCAACTTTTGATATGGAAATGCTTCTTGTCATCTTGATGCACTCtgtaaaatacatgtattaatCATGACTCAAAAGGAaagcaataataaatgattGAGCCAGCATGCTCTGATAAAACCTAATATGAACATCCTAGCAATGCTTTGTCTTACTCTAGTGCTTGGAACTCAGTTGACCAAAGGGCGCCttactttacaaataaattatttctttgttga

Function

symbol description
nme3 Predicted to enable nucleoside diphosphate kinase activity. Acts upstream of or within positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway. Is expressed in several structures, including brain; digestive system; male organism; pleuroperitoneal region; and tail bud. Orthologous to human NME3 (NME/NM23 nucleoside diphosphate kinase 3).

NR:

description
nucleoside diphosphate kinase 3 isoform X3

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229006.1 True 1098 mRNA 0.47 5 20331943 20334050
XM_043229013.1 False 1084 mRNA 0.47 5 20331334 20334050

Neighbor

gene id symbol gene type direction distance location
mrps34 mrps34,LOC107567325 coding upstream 104 20328156 ~ 20331230 (+)
spsb3a spsb3a,spsb3,LOC107689049,LOC107670907,LOC107745892,LOC107754412 coding upstream 3782 20321945 ~ 20327552 (+)
atp6v0ca LOC107754334,LOC107567372,LOC107552490,LOC107745898 coding upstream 11044 20316318 ~ 20320290 (+)
trnac-gca_3 NA coding upstream 17003 20314260 ~ 20314331 (+)
lasp1 LOC107754308,LOC107745925,LOC107552489,LOC107689048,LOC107567378,LOC108413872,LOC108258608,LOC107670908 coding upstream 21874 20296472 ~ 20309460 (+)
cramp1 cramp1,LOC107661046,LOC107745824,LOC107689053 coding downstream 33395 20367445 ~ 20382139 (+)
dhrs7b dhrs7b,LOC107745957,LOC107755107,LOC107689054,LOC107661099 coding downstream 48222 20382272 ~ 20386834 (+)
LOC122341693 LOC107739398,LOC107754510,LOC107661018,LOC107689062 coding downstream 96319 20430369 ~ 20443456 (+)
LOC122342178 LOC107661000,LOC107567245,LOC798483,LOC107754527,LOC107552447 coding downstream 110858 20444908 ~ 20451990 (+)
zgc:66443 LOC107567227,LOC107754585,LOC107660992,LOC107552485,LOC107689065,LOC107739396 coding downstream 123088 20457138 ~ 20460351 (+)
G21655 NA non-coding upstream 17190 20230015 ~ 20314144 (+)
LOC122342124 NA non-coding upstream 145808 20173694 ~ 20185526 (+)
G21652 NA non-coding upstream 158332 20168636 ~ 20173002 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding upstream 170123 20160436 ~ 20161211 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 360915 19954076 ~ 19970419 (+)
G21660 NA non-coding downstream 5841 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 7022 20341072 ~ 20342296 (+)
G21669 NA non-coding downstream 59511 20393561 ~ 20393901 (+)
G21671 NA non-coding downstream 73742 20407792 ~ 20408327 (+)
G21687 NA non-coding downstream 146281 20480331 ~ 20518038 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 135613 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 217836 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 262081 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 928158 19399408 ~ 19403176 (+)
G21213 NA other upstream 1038993 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 548148 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 961652 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1303693 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1641202 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1642459 21976509 ~ 22025911 (+)

Expression


Co-expression Network