nol12 (nol12,LOC107676179)


Basic Information

Item Value
gene id nol12
gene name nol12,LOC107676179
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8178514 ~ 8181737 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229152.1
CGGTAGCTCAGCTCGCAGAAGCGGAAGTTGTGTAAAGTCACACGTGTTTATCAAAAAAACCCACGGAAATGGCGAAAAATGGTAAACTCAAGCAGAAACCAAAGTTTAACGGCGACGtgaaacagaagaagaagaagcagagaAAATGCGTGCTGATGTTCGACGATAAAGAGCGACAAGAGTTCCTGACCGGCTTCCACAAGAGAAAGCTCCAGCGGAGGAAAGCAGCGCTGGAGGAGATGAAGAACAAGCTGAAGGAGGAGCAGAAGCGCGTCAGAGACGAGagacacagagagTATCTGAAGATGCTGCAGGAGCGCCGGCAGGCTCTGGaggaaGCAGACGAGCTGGTGGATGTCATCACAGCCACGAAAGAGAGCGTCCAGTACGACCATCCCAACCACACCGTCACCGTGACGACCATCAGTGACCTCGACCTATCAGCAGACAGGTTACTGCAGCCAGATCAGggaGATGAAGAGAGTAAAGAGGAGGATGGTGAGAAAACCCAGGCTCTTCCGAGGAAAGCAGGAAACCCCCTGAAGTCTGAAAAgatCCAGAGGCTCACGGCGTCACTGAACAGTCTCGCCAAACAAAAGAAGAGGAAACGGAAgcccaaacaggaaatgaggcGGGGAAACCAGCAGGCGGACAGGAAGtcgtcatcattcactcacaaCAAGAAGTTACGAAGAGGAAAAACCACCAGACGCAAACTAACGGGTCGAAACGAGCGCAACCAGGACCGATGAATGACGGACGCCGCGCTAAACTCACGAACTCTCGGCTAACGCTGCGCTCATGTGTTGTGTTTTACATGTTTGATACTCAGaggacattaaaaaaatgaatctttcATCATAAA

Function

symbol description
nol12 Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human NOL12 (nucleolar protein 12).

NR:

description
nucleolar protein 12-like

GO:

id name namespace
GO:0005730 nucleolus cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
K14851 RRP17, NOL12; ribosomal RNA-processing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229152.1 True 865 mRNA 0.51 6 8178514 8181737

Neighbor

gene id symbol gene type direction distance location
srebf2 LOC107574638,LOC107745393,LOC107721684,LOC107572757 coding upstream 12137 8155371 ~ 8166377 (+)
LOC122331730 NA coding upstream 200624 7974543 ~ 7977890 (+)
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 370752 7801296 ~ 7807762 (+)
LOC122334406 LOC107587953 coding upstream 381861 7786116 ~ 7796653 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding upstream 523324 7649629 ~ 7655190 (+)
LOC122339678 NA coding downstream 2811 8184548 ~ 8189293 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding downstream 7716 8189453 ~ 8200478 (+)
ndufa6 ndufa6 coding downstream 19862 8201599 ~ 8207081 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding downstream 38187 8219924 ~ 8227354 (+)
rrp7a LOC107673310,LOC107591059 coding downstream 46047 8227784 ~ 8229614 (+)
G17990 NA non-coding upstream 33489 7984480 ~ 8145025 (+)
G17998 NA non-coding upstream 68745 8015637 ~ 8109769 (+)
G18016 NA non-coding upstream 75097 8103050 ~ 8103417 (+)
G17993 LOC107566823,LOC107739961,LOC107574374,LOC107576777,LOC107659785,LOC107565530,LOC107742984,LOC107710146,LOC107725412,LOC107717634,LOC107655767,LOC107571898 non-coding upstream 86272 7989126 ~ 8092242 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 254885 7915862 ~ 7923629 (+)
G18010 NA non-coding downstream 33515 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding downstream 34787 8216524 ~ 8217031 (+)
LOC122331402 NA non-coding downstream 130652 8312389 ~ 8314490 (+)
G18055 NA non-coding downstream 292556 8474293 ~ 8490417 (+)
G18092 NA non-coding downstream 489924 8671661 ~ 8675886 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 25620 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 118657 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 212320 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 215538 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 227150 7950854 ~ 7951364 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 78347 8260084 ~ 8563379 (+)
G18048 NA other downstream 331612 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 362554 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 798854 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 828313 9010050 ~ 9012178 (+)

Expression


Co-expression Network