irgf4


Basic Information

Item Value
gene id irgf4
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8109057 ~ 8121029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229214.1
gctcattcgtgacacaTAGAGTATCAAAGATGTACTGACGTGATTATTCACACGTGAAACTCTTCATTAATTCATGATTAGTTAAGAACTTCAATAATCAttagtatttaataaacattagtaTTTAAGTTAAGTATTAATTTAGCCATCtggtagaaaaaaaagattacatatatttatatatatatgtgtgtgtgtgttttttttttttttccaccaaatGACGTCAGAATAGTAGATAAAAAATCCTCTGGGAATCAGTGGCGACCCAAAGCAGCGTGGCCAGCTTTCTTCTGAATATCTTCATAGTGTTCTGAGGAAATGAAGACAGGACCATCGTGTCGTGAGTTTTCTTTGAGGAGTCTTCATGGTTGAGAACTTCAGTCATCATCTGATGAGTATTCATTCAGGCACTGGCAGATAATTATTCAGGTGTTTATTGTAAAGTGCACGTTTCGAGaggtgcattaaaataaataaaacctggATTAATGtggatattttaattaaaaacacgtgtccataaaaaaatatgtaatctaTGAAATAGCATGAGCGTGAGCCAGCTTGTGGATCAGTGACGTTAAAGAAAGCAGCACCTTTCAGGTATTGTTTTATTAGGGCTGTGCTTTCTCACGTCTTCTTGTGGCTGtaaatatttctctttctctttcagcgTAAGCTGCTCAATTGAATATAGTTTTtcaagcatgtgtttttttatagtattgacagagatgaaataaaaagtacatgCAAGTCTATTCTCTGATTAGATAAAGCAACATCGACTCAAATATCCGAAGACTTGTGCTGCATTTCAGGACAAAGTATAAGAAGTGTGGAAACTCTTAAAGTATCGTGTGAAGCGTTGGCTTTACTTCAGGAGATTAGTCTCCGGGACGCGCTGCTAACTCGCTTCTGGCTTctagagaagaagaagaagacctCGGGACAAAACATGAGAATTAAAGACACGAGCAACCAAATTATAAACGTCATAAAAGCTCTTATAGAGTCAGATTTGCTGGATATGATATGATTGCATTTCTATTAAAGTCAGAATTAGTCAAGAAAAGTCCTAACCGTGTGATAAATTGCAGTTATCCTTAATTTACTTCTTTCTCAGGGGATGAAATGAGCTTTCTGTGAGAAAAccttctaaaatatatatatatttttaataaaaagcagatTAATAAAGACCAGATGCTCTGATATTATCTCAGCTGTTTACGAGAGCCTTGatgttctttatatatttacatgtgccTTCATTTCATCTCTATATGACCAAAATATGAGAAAACCAACACGTTCATGTGTATAATAGCAGACGCTCAGTCCTCTTTAACGTGTGTTCTTCAGGTCCGGGGTTATATAGATTACTGAAAATAACTACATTATGACACTTTTTCTCATCTTTCCcaaaaaacacatgcttttaaaaacaatattaaagatTTGCTGTTGTGGAGATCACGATTAAAACGCAGATGTGATAGAGCTGGTTTGAAGAAGCGACTGGACGGGTTTCGGCGTGAGAAACCTCCCCAGGACGTTCTTATCATTCAGTTACAACAATCATAACAATAATGATGTGGTTTACTGGGAGTCTCAAAGAGTTTCTGTCACAGCGAGGAGGAGGCTTACAGAAGCGGTGATCAAGTTTAAAGTAGATGAAATAAAACCATGTTAGGTTTCTGTATGGACTTCATCTTGTACAAAACACAAGCCCTCTGATGATCTAGAAAACCtcatacacacagatatacacacactaatCTACTGGAGCCAATAATTACAGACTAAACAGATGAATAATtacataacaaaatatataatcatacaTAAAACTGTTAACAGCACCGGCTCGAATGCCTTTAATTATACGGCTACCacacaataacaaaatattaaaaccaaaaaatctaTGTAAATGACTGGGTGGAGCTTAAATGAAAGTCCATTACCTCGTCTTGTGGGCAGAGCTAAAACATCTGTTAATAAATACACGAGAGACACACATGACAAGAAAACATCTGAAGATCAGCGCTGCAatcttGAAGCTCAgctaaaaacagaagaaaactaaAGAATGGTATGAAAACATGTCCTCATCTGACATGCTGCACCTGCTCTATAGAACAAAGAATCTGAATAATCCATACAGGCCTATAGCAGTAAAAAAGGACTTCAGCTCAGCAAGCAGTCTTCAAATTAAACAGCTCTTACCAGGAAGAGACAGACGTGTTATATCTGCTTTCTGTCACACCGACTCTCTTCTTCTGACAAAATAAATCCATCAATGAAGAACCAAGAACCACTCTTTATAGAAGGATCTTTGAGAAGTTTGTTTCTGAACAGATAGATTTTGTGGTGATTTATTCTTTAAACTTGTTcagaaagtgaaagtaaatTTCAGATCTCTGGAGCTCAAAGACTGAAAATGGCTTCACTATCTGAAGATGATTTTTCTTGTCCTGTATGTCAGGAAATCTTCAAGGATCCTATTCTTTTATCATGTAGTCACAGTGTGTGTAAAGAGTGTCTTCAACAGTTCTGGAGAACCAAGAAAACCCAGGAGTGTCCCGTCTGCAGGAGAAGATCCTCTAAAACTGAACCTCTGCATAATCTTGTGTTAAAAAACCTGTGTGAGTCGTTCCTGAAGGAGAGAAATGAGAGACGCTCATCAGGATCTGAGGAGATCTGTAGGTTACACAGAGAGAAACTCAAACTCTTCTGTCTGGAGGACAAACAGCccgtgtgtgtagtgtgtgttaACTCACAGAAACACCACAATCATAAGTTCAGACCCATCGATGAAGTGGTTTCATCATGTAAGGAGCAGCTCAATACCGCACTGAAATCATTACAGGAGAAACTTACAtgcaatgaaaaaatgaaaggaGAGTTTGAAAAAACATCTCAACACATCAAGTCTCAAGCTGAGCACACAGAGCGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACAATCACTGCATtgagggaggaagaggagcagaagaagaagatgatgaaggaGAAGCTGGAGGAGATCAACAGACACATCTCAGCTCTTTCAGACACAATCAAAGACACGGAGGAGATGATGAAAGACAGTGACGTCTGCTTTTTGAAGGAGTTTCCAGTCTCAAAGAAAAGAGTCCAGATCTCATCACAGCCACAGAATCTACCGATACATTCTGGAGCTTTGATTGATGTGTCACGATACTTGGGCAACCTGTCCTTCAGAGTCTGGAAGAAGATGCAAGACACCGTCCAGAAGACTTCAGTGATtttggatccaaacacagctcATCCAGATCTTCTTCTCTCTGATGATCTGACCAGTGTGAGACGGATCTACAACAGTCAGTCTGTTCCTGATAATCCTGAGAGATTCGACTATTATGCCTGTGTTGTGGGTTCAGAGGGGTTTAACTCAGGAACACACTGCTGGGATGTGGAGGTTAAGGAGAGTAAATACTGGCGACTGGGAGTAACTACGGCATCAAACCAGAGGAAGGGAGAggatttcttcaaatctgatgtctggtttgtgtCATACGGGTGGTTTCCAGGTTttggttctggttctggtttTGGTGTTAAACGTAATCTTGATCGTGTGAGAGTGTATCTGGACTATGACAGAGGAATGGTGTCATTCTCTGATCTTGTAACtaacacacatctacacacattcACTACCAccttcactcacacactcttcccttttttttggaattattcCTCTCTGAGAATCTTATcaatcaataatcaataatctTTTGATCTGAATCTTCCtgctttcatttttcatcaagATCACATGAATAAGAGACTGAACATCCGACCAGAAAACTGACGactaaatactgtaataaacactgtattaaaaacatgatgttttgattataaaaatggagaaaaaaaaccttgggagttttagttcaattttaaactcagctgtgtcagatagtgtaaa
>XM_043229223.1
TTTGCTGACAAGACGTTGTGTCCAGGAAGAGTTTTATAACGAGTATTTGAGTATTAATTTGAGTATTTCATTGTTCTCTTGAGTTTATATCAGTTTACTGTACTGTTTGAATCTCTTACCAGGAAGAGACAGACGTGTTATATCTGCTTTCTGTCACACCGACTCTCTTCTTCTGACAAAATAAATCCATCAATGAAGAACCAAGAACCACTCTTTATAGAAGGATCTTTGAGAAGTTTGTTTCTGAACAGATAGATTTTGTGGTGATTTATTCTTTAAACTTGTTcagaaagtgaaagtaaatTTCAGATCTCTGGAGCTCAAAGACTGAAAATGGCTTCACTATCTGAAGATGATTTTTCTTGTCCTGTATGTCAGGAAATCTTCAAGGATCCTATTCTTTTATCATGTAGTCACAGTGTGTGTAAAGAGTGTCTTCAACAGTTCTGGAGAACCAAGAAAACCCAGGAGTGTCCCGTCTGCAGGAGAAGATCCTCTAAAACTGAACCTCTGCATAATCTTGTGTTAAAAAACCTGTGTGAGTCGTTCCTGAAGGAGAGAAATGAGAGACGCTCATCAGGATCTGAGGAGATCTGTAGGTTACACAGAGAGAAACTCAAACTCTTCTGTCTGGAGGACAAACAGCccgtgtgtgtagtgtgtgttaACTCACAGAAACACCACAATCATAAGTTCAGACCCATCGATGAAGTGGTTTCATCATGTAAGGAGCAGCTCAATACCGCACTGAAATCATTACAGGAGAAACTTACAtgcaatgaaaaaatgaaaggaGAGTTTGAAAAAACATCTCAACACATCAAGTCTCAAGCTGAGCACACAGAGCGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACAATCACTGCATtgagggaggaagaggagcagaagaagaagatgatgaaggaGAAGCTGGAGGAGATCAACAGACACATCTCAGCTCTTTCAGACACAATCAAAGACACGGAGGAGATGATGAAAGACAGTGACGTCTGCTTTTTGAAGGAGTTTCCAGTCTCAAAGAAAAGAGTCCAGATCTCATCACAGCCACAGAATCTACCGATACATTCTGGAGCTTTGATTGATGTGTCACGATACTTGGGCAACCTGTCCTTCAGAGTCTGGAAGAAGATGCAAGACACCGTCCAGAAGACTTCAGTGATtttggatccaaacacagctcATCCAGATCTTCTTCTCTCTGATGATCTGACCAGTGTGAGACGGATCTACAACAGTCAGTCTGTTCCTGATAATCCTGAGAGATTCGACTATTATGCCTGTGTTGTGGGTTCAGAGGGGTTTAACTCAGGAACACACTGCTGGGATGTGGAGGTTAAGGAGAGTAAATACTGGCGACTGGGAGTAACTACGGCATCAAACCAGAGGAAGGGAGAggatttcttcaaatctgatgtctggtttgtgtCATACGGGTGGTTTCCAGGTTttggttctggttctggtttTGGTGTTAAACGTAATCTTGATCGTGTGAGAGTGTATCTGGACTATGACAGAGGAATGGTGTCATTCTCTGATCTTGTAACtaacacacatctacacacattcACTACCAccttcactcacacactcttcccttttttttggaattattcCTCTCTGAGAATCTTATcaatcaataatcaataatctTTTGATCTGAATCTTCCtgctttcatttttcatcaagATCACATGAATAAGAGACTGAACATCCGACCAGAAAACTGACGactaaatactgtaataaacactgtattaaaaacatgatgttttgattataaaaatggagaaaaaaaaccttgggagttttagttcaattttaaactcagctgtgtcagatagtgtaaa

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03070 Bacterial secretion system
ko02024 Quorum sensing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229214.1 True 4021 mRNA 0.38 9 8109057 8121029
XM_043229223.1 False 1905 mRNA 0.40 7 8109057 8117987

Neighbor

gene id symbol gene type direction distance location
LOC122331782 NA coding downstream 17433 8084369 ~ 8091624 (-)
LOC122331758 NA coding downstream 141186 7966808 ~ 7967871 (-)
LOC122331721 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 coding downstream 142839 7964659 ~ 7966218 (-)
LOC122341277 NA coding downstream 214780 7890178 ~ 7894277 (-)
aatka aatka,LOC107711236,LOC107587956,LOC107670475,LOC107567236,LOC107757347 coding downstream 345733 7725703 ~ 7763324 (-)
LOC122334091 NA coding upstream 53007 8174036 ~ 8177995 (-)
LOC122331822 NA coding upstream 113870 8234899 ~ 8257213 (-)
LOC122341283 hebp1,LOC107670539,LOC107661078 coding upstream 181042 8302071 ~ 8305993 (-)
LOC122329328 hebp1,LOC107670539,LOC107661078 coding upstream 264035 8385064 ~ 8388690 (-)
LOC122331080 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 377703 8498732 ~ 8502673 (-)
G18159 NA non-coding downstream 20336 7989728 ~ 8088721 (-)
LOC122331793 NA non-coding downstream 29557 8076874 ~ 8079500 (-)
LOC122331807 NA non-coding downstream 84478 8023611 ~ 8024579 (-)
G18160 NA non-coding downstream 99049 7990515 ~ 8010008 (-)
G18121 NA non-coding downstream 152333 7954482 ~ 7956724 (-)
G18147 NA non-coding upstream 37035 8158064 ~ 8211299 (-)
G18142 NA non-coding upstream 58234 8179263 ~ 8181729 (-)
G18146 triobp,stap2,triobpb,LOC107574640,LOC107721687,LOC107661081 non-coding upstream 73347 8194376 ~ 8198087 (-)
G18128 NA non-coding upstream 85849 8206878 ~ 8207333 (-)
G18129 fam234b,LOC107714892,LOC107721680,LOC107576065 non-coding upstream 179385 8300414 ~ 8383611 (-)
LOC122331739 NA other downstream 94356 8010976 ~ 8014701 (-)
LOC122341278 adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976 other downstream 163084 7920404 ~ 7945973 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other downstream 195623 7896602 ~ 7913434 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other downstream 1399676 6702503 ~ 6709381 (-)
crb3a crb3,crb3a,LOC107599343,LOC107602711 other downstream 1483526 6619217 ~ 6625531 (-)
LOC122339740 NA other upstream 86669 8207698 ~ 8209093 (-)
LOC122342198 NA other upstream 97873 8218902 ~ 8219055 (-)
fmc1 NA other upstream 188503 8309532 ~ 8398828 (-)
zgc:113210 NA other upstream 871685 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 1013014 9134043 ~ 9138089 (-)

Expression


Co-expression Network