LOC122331721 (si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827)


Basic Information

Item Value
gene id LOC122331721
gene name si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7964659 ~ 7966218 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229233.1
cGTAGCTGATGACAGGAGCTGGTCTGGAGATCAGGAAGGAGCCTCACAGACGTCAAGCAATCAAACTGAAGTCCCGCGATCAAAGCAGTCTTTTGAATGCGATCAGTGCGGGAAAGCCTTTCCGAAGATGTTTTCTCTCGTGCAGCACAAACGCGTGCATTCAATCGCCAGGCCTCACGCTTGTGAAAAGTGCGGAAAGAAATTCACGCTGCAGAGAGCGCTGGAGACCCACCTTCGCAAGCACTCGCAGAAGCCCGAGAAGCAGAAGTTTCCCTGCGCTAcctgcgggaagagcttcaggGACCTCGCGGCGCACGAGCTCGTCCACGCCGAGGTCAAACCGTTCGCCTGCGAAACCTGCGGACAGGGGTTCACGATCAAAAGGAGTTTATACATGCACCAGAGGGTGCACACGGGCGAGAAACCCTACAGATGCGACACCTGTGGCAAGTGCTTCTCCCTCATCGGCACGTTGAACTACCACAAAAGGATCCATTCAAACGACAGGCCGATAAAATGCAGCCACTGCAATAAGAGCTTCAAATATCACAAGCTTCTGAAACACCACCTGCGCGTGCACACGGGCGAGAGGCCGCACACGTGCGACGTCTGCGGGAAGAGCTTCGCGCTCTCCGGGACTCTAAAACGACACGTCCTCATTCACACCGGCGACAAGCCGTACGTGTGCGAGGTGTGCGGCAGGCGATTCAACCAGAGGAGCACCCTGAAAGGCCACATGCGAGTGCACGGGGAAAAGCGGTTCATGTGCGAAATGTGCGGGAAAACGTTCCAGTATAATTACGTCCTGAGGAACCACATCCTCACGCACGGCCAGGGCGGACACGCGGGCGATAAGAGCAACGCTCGGCGCTGCGACGTGTGCGGGAAGCTGCTGAGCTCCGCCTACGCGTTAAAAGCGCACTCGCAGCTGCACTCGGGCGACGGCAAGCCTCACGCGTGCGCGCTGTGCGACAGAAGGTACAGCAGCGCGCACTCCCTCCGGATGCACGCGCAGCTCCACACGGGAGAGAAACCCTTCAGGTGCGACGTCTGCGGCAAAGACTTCTCTCTGAGGGCTTCGTATAAAACCCACGTGTTTCTGCATTCGGGAGAAAGACCTCACGAGTGCGCGTCGTGCGGGAAGCTGTTCAAGCTGTCGAGCTCTTTGAAGATGCACGCGCGCACCCACACCGGCGAAAAACCGCACAAGTGCGAAACGTGTGGGAAGGCGTTTCATTTGTCGGCCAACCTGAAAAGGCACCGGCTCGTGCACACCGGGGAGAAGCCGTTTACCTGTGACATTTGTTTGAAGAGTTTCACGCAGCCCAACAACTTGAAGGCGCACATGCACGTTCACACGGGGAAAAAACCGTACACGTGCACCAAGTGCTGGAAAAGTTTTGCCTATCAGAGAAACTACAAAGATCACAAATGCGCTCCGCTTTGAGATGCTTTGAGATGTGTCGGACTGCTGAATTGGGGTCTGCCTACAGGCCCTTGGATTTCGTTGTAAAGCttgtaaatcattttgaaagttagactgaattaatttatttatta

Function

symbol description
si:dkey-182i3.10 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

NR:

description
PREDICTED: zinc finger protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229233.1 True 1560 mRNA 0.55 1 7964659 7966218

Neighbor

gene id symbol gene type direction distance location
LOC122341277 NA coding downstream 70382 7890178 ~ 7894277 (-)
aatka aatka,LOC107711236,LOC107587956,LOC107670475,LOC107567236,LOC107757347 coding downstream 201335 7725703 ~ 7763324 (-)
sdk2a LOC107672436,LOC107744971 coding downstream 410211 7439251 ~ 7554448 (-)
cdc42ep4a cdc42ep4a,LOC107672486,LOC107711229,LOC107587960,LOC107744970,LOC107670511,LOC107599324 coding downstream 527942 7419126 ~ 7436717 (-)
pmp22a pmp22a,LOC107744969,LOC107711228,LOC107587961,LOC107670536,LOC107599349,LOC107672509 coding downstream 567357 7394724 ~ 7397302 (-)
LOC122331758 NA coding upstream 590 7966808 ~ 7967871 (-)
LOC122331782 NA coding upstream 118151 8084369 ~ 8091624 (-)
irgf4 NA coding upstream 142839 8109057 ~ 8121029 (-)
LOC122334091 NA coding upstream 207818 8174036 ~ 8177995 (-)
LOC122331822 NA coding upstream 268681 8234899 ~ 8257213 (-)
G18121 NA non-coding downstream 7935 7954482 ~ 7956724 (-)
G18120 ighv4-5 non-coding downstream 12991 7950861 ~ 7951668 (-)
LOC122331800 LOC107672496,LOC107711244 non-coding downstream 118614 7844349 ~ 7846045 (-)
G17967 LOC107757375,LOC107672496,LOC107670496,LOC107711245,LOC107711244,LOC107578720 non-coding downstream 120445 7843776 ~ 7844214 (-)
G17966 NA non-coding downstream 121694 7842150 ~ 7842965 (-)
G18159 NA non-coding upstream 23510 7989728 ~ 8088721 (-)
G18160 NA non-coding upstream 24297 7990515 ~ 8010008 (-)
LOC122331807 NA non-coding upstream 57393 8023611 ~ 8024579 (-)
G18165 NA non-coding upstream 82753 8048971 ~ 8155592 (-)
LOC122331793 NA non-coding upstream 110656 8076874 ~ 8079500 (-)
LOC122341278 adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976 other downstream 18686 7920404 ~ 7945973 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other downstream 51225 7896602 ~ 7913434 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other downstream 1255278 6702503 ~ 6709381 (-)
crb3a crb3,crb3a,LOC107599343,LOC107602711 other downstream 1339128 6619217 ~ 6625531 (-)
LOC122341483 LOC107661847,LOC107711201,LOC107728682,LOC107670454,LOC107599341,LOC100536643,LOC107602685 other downstream 1350337 6607952 ~ 6614322 (-)
LOC122331739 NA other upstream 44758 8010976 ~ 8014701 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other upstream 87821 8054039 ~ 8218088 (-)
LOC122334075 NA other upstream 92413 8058631 ~ 8171661 (-)
LOC122339740 NA other upstream 241480 8207698 ~ 8209093 (-)
LOC122342198 NA other upstream 252684 8218902 ~ 8219055 (-)

Expression


Co-expression Network