LOC122332086 (gtf2f1,LOC107737737)


Basic Information

Item Value
gene id LOC122332086
gene name gtf2f1,LOC107737737
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12974708 ~ 12980093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229414.1
CTGATGACAAGCATAGAGAAGAAGACCTAGTTGTGGACGGTGCGGGCTGCATGTATTATATccttaaatttgtttattttcatttatttatctatttttggAAGGCGAATTTACTCGGTTTATCAAATACCGCAAAGGGGAACAATATCAGCAGCCGGACGAGGTGATAAGTGTTATAAAGTGAAGCTACGTAAAGCATCGGATGTTATCTGGTTAGCCGGTTGAAGGTTATTAACGGGCCTTCTTGCTCTGCAGTGATGACGTCGCTGGGTAGCAGCAGTTCCTCCACAACAGAGTATGTTGTACGAGTTCCTAAAAACACCAGTAAGAAGTACAACATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGTGACATGAGCAACAGGCGTATATATGGTGAGGAGGAGACCCAGGAGGGGGCAGCAGGCAGTGAATTTggaaagaaacagagagaggaagCACGGAGGAAGAAGTATGGTATCGTTACAAAGGAGTTCAAGGTGGAGGACCAGCCCTGGATCCTTAAAGTTAATGGCAAGGCAGGAAGAAGATTCAAGGGTCTGAAAAAAGGTGGAGTCACAGAGAATGCTTCCTACTACATCTTCACACAGTGTCCCGATGGGGCCTTTGAGGCGTTTCCAGTGCACGCTTGGTACAACTTCACACCGCAGGCCAAACACCGCACGCTCACAGCAGAGGAGGCAGAAGAGGAATGGGGAAGGAGAAACAAAGTGGTGAATCACTTCAGTATCATGCTTCAACGACGCCTCCGAGAACAGGAGCGAGGAGAGGACgatgaggaggaaaaggagagaagggggaagaaaaaaaagaagaagggaGGCAGGGGAGGAGACCTGCGCATACATGACCTTGAGGATGATTTGGAAATGAGCAGCGATGAGAGCGACGGCAGCAATGGAGACGATGATGAAGCCAAGTCAAAAGCTAAAAAGGACAAAGGCCCCAAAGGCAagggaaagaagaagaagaaaaagggcAGTGACCTGGAAGGGATCGAGGATAGTGATGATGGTGACTTTGAGGGGTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCTGAGGAAGAAGAGCCGGAGAAGACCAAACCCAACAAGGGAGAGGATGTCCCTAAAGggATTGATGAAATGTCTGACAGCGAGGAAGAGAGTGAGGAAGAAAACAAGAATGAAGAAGAAGGcaaggaggaagaagaggaagaggatggaAAGAAGACACCAGTGCAgggggaaaagaagaaaaagaaagataaagACAGCAGTGGCGAGTCCGACAGCTCTGAGGACAGCGATATTGAAGGAGAGGCAGCTTCAGCACTGTTCATGGTGAAGAAGCGCACTCCTCCTAAACGAGGGGGTGGTCGTGGCTCAGCAGGTAGTTCAAGAACAGGAAGTCGGCCTGGCACACCTTCTATTGACAATGCTGCCACTTCCAACACTCTCCGTGCCGCTGCCAACAAACTGGAGCAAGGTAAGCGTCAGACAACTGTGCCTAGCTCAGAGACTCCAGCGGCCAAGAGGTTAAAGATGGAGCCCAGCCCTCAGAGCTCTTCAGGGAAGAGCACACCCCAACCAGCATCAGGAAAATCCACTCCCAGCTCCAGTGATGTGCAGCTGACAGAGGATGCCGTGCGCAGGTATCTCATCAGGAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAGCGCACAGGCCTTAGCAGCGAGCAAACGGTCAACGTGCTCGCCCAGATCTTGAAGAGGCTCAACCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACCGAGTGAGCCCAGCTTAAGAGAGAGTGAAACCGAACCCTCGTCACCAGCAGCACCTCCTACAGCTCGTTTAGGTTAAGGCTTCCAACTTGATCTGATATTTGTCGTTTTGCTTGCAACCTTTCACAATAAACAGTAGtattaaagtgctgcaaactgagTTCCAGATGAGAATGCTGGAGGTCCGAAGAGTGAAAACACATAGAAGACTGAGAAGCAAGATGGAGTaggattttgtattttgtaatgtgCATAGGAAAGATGTGTTTGTAAATCCCACATCTATGCCTGTTAATGCCTGACATTTTCATACACTTCAACATATCaacataatgattttttttcatgaaaaccTGCTGAATTTTGAGAGAGGGTCTTTACACAGAGAATACAATCATCATATTCTCTTGGTAAagaatttgttgtttttctttgtttttactgGTTAAGGTAAAACTTTTGAAGGAAATTTCTCCTTTGGTAGTCCATTAAATTTGTTCCAAaattaa

Function

symbol description
gtf2f1 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

NR:

description
PREDICTED: general transcription factor IIF subunit 1 isoform X1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229414.1 True 2365 mRNA 0.47 16 12974708 12980093

Neighbor

gene id symbol gene type direction distance location
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding downstream 312860 12571028 ~ 12661848 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding downstream 430227 12530109 ~ 12544481 (-)
si:dkey-283b1.7 si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768 coding downstream 452921 12515150 ~ 12521787 (-)
rpl23 rpl23,RPL23,rl23 coding downstream 459913 12512603 ~ 12514795 (-)
ccdc103 LOC107758482,LOC107583073,LOC107695153 coding downstream 462243 12510609 ~ 12512465 (-)
LOC122331923 NA coding upstream 994 12981087 ~ 12987204 (-)
LOC122331939 NA coding upstream 7257 12987350 ~ 12992329 (-)
LOC122332129 NA coding upstream 70193 13050286 ~ 13050861 (-)
LOC122332149 NA coding upstream 103116 13083209 ~ 13083734 (-)
LOC122341303 NA coding upstream 103933 13084026 ~ 13084966 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 71798 12900781 ~ 12902910 (-)
G19677 LOC107737766 non-coding downstream 87754 12864310 ~ 12886954 (-)
LOC122332655 NA non-coding downstream 679285 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 703772 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 744329 12226575 ~ 12230379 (-)
LOC122332187 NA non-coding upstream 92467 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 99977 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 110578 13090671 ~ 13091152 (-)
G19726 NA non-coding upstream 145428 13125521 ~ 13129608 (-)
G19811 NA non-coding upstream 377486 13357579 ~ 13357789 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 211618 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 294908 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 630836 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 1053941 11909775 ~ 11920767 (-)
G19383 NA other downstream 1093749 11853748 ~ 11880959 (-)
G19676 LOC107690708 other upstream 25903 13005996 ~ 13068190 (-)
G19700 NA other upstream 66948 13047041 ~ 13047494 (-)
gng13b NA other upstream 805916 13786009 ~ 13792602 (-)
G19933 NA other upstream 825275 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 1222837 14202930 ~ 14204350 (-)

Expression


Co-expression Network