LOC122332168 (gtf2f1,LOC107737737)



Basic Information


Item Value
gene id LOC122332168
gene name gtf2f1,LOC107737737
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12895326 ~ 12900216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043229474.1
ATGACAAGCATAGAGAAGAAGACCTAGTTGTGGACGGTGCGGGCTGCATGTATTATATccttaaatttgtttattttcatttatttatctatttttggAAGGCGAATTTACTCGGTTTATCAAATACCGCAAAGGGGAACAATATCAGCAGCCGGACGAGGTGATAAGTGTTATAAAGTGAAGCTACGTAAAGCATCGGATGTTATCTGGTTAGCCGGTTGAAGGTTATTAACGGGCCTTCTTGCTCTGCAGTGATGACGTCGCTGGGTAGCAGCAGTTCCTCCACAACAGAGTATGTTGTACGAGTTCCTAAAAACACCAGTAAGAAGTACAACATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGTGACATGAGCAACAGGCGTATATATGGTGAGGAGGAGACCCAGGAGGGGGCAGCAGGCAGTGAATTTggaaagaaacagagagaggaagCACGGAGGAAGAAGTATGGTATCGTTACAAAGGAGTTCAAGGTGGAGGACCAGCCCTGGATCCTTAAAGTTAATGGCAAGGCAGGAAGAAGATTCAAGGGTCTGAAAAAAGGTGGAGTCACAGAGAATGCTTCCTACTACATCTTCACACAGTGTCCCGATGGGGCCTTTGAGGCGTTTCCAGTGCACGCTTGGTACAACTTCACACCGCAGGCCAAACACCGCACGCTCACAGCAGAGGAGGCAGAAGAGGAATGGGGAAGGAGAAACAAAGTGGTGAATCACTTCAGTATCATGCTTCAACGACGCCTCCGAGAACAGGAGCGAGGAGAGGACGATGAGGAGGAAGGAGAGAAgggggggaagaaaaaaaagaagaagggaGGCAGGGGAGGAGACCTGCGCATACATGACCTTGAGGATGATTTGGAAATGAGCAGCGATGAGAGCGACGGCAGCAATGGAGACGATGATGAAGCCAAGTCAAAAGCTAAAAAGGACAAAGGCCCCAAAGGCAagggaaagaagaagaagaaaaagggcAGTGACCTGGAAGGGATCGAGGATAGTGATGATGGTGACTTTGAGGGGTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCTGAAGAAGAAGAGCCGGAGAAGACCAAACCCAACAAGGGAGAGGATGTCCCTAAAGggatTGATGAAATGTCTGACAGCGAGGAAGAGAGTGAGGAAGAAAACAAGAATGAAGAAGAAGGcaaggaggaagaagaggaagaggatggaAAGAAGACACCAGTGCAgggggaaaagaagaaaaagaaagataaaggcaatctctttttgcattttttctttgtatttgaaAGATCCGACAGCTCTGAGGACAGCGATATTGAAGGAGAGGCAGCTTCAGCACTGTTCATGGTGAAGAAGCGCACTCCTCCTAAACGAGGGGGTGGTCGTGGCTCAGCAGGTAGTTCAAGAACAGGAAGTCGGCCTGGCACACCTTCTATTGACAATGCTGCCACTTCCAACACTCTCCGTGCCGCTGCCAACAAACTGGAGCAAGGTAAGCGTCAGACAACTGTGCCTAGCTCAGAGACTCCAGCGGCCAAGAGGTTAAAGATGGAGCCCAGCCCTCAGAGCTCTTCAGGGAAGAGCACACCCCAACCAGCATCAGGAAAATCCACTCCCAGCTCCAGTGATGTGCAGCTGACAGAGGATGCCGTGCGCAGGTATCTCATCAGGAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAGCGCACAGGCCTTAGCAGCGAGCAAACGGTCAACGTGCTCGCCCAGATCTTGAAGAGGCTCAACCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACCGAGTGAGCCCAGCTTAAGAGAGAGTGAAACCGAACCTCGTCACCAGCAGCAC

Function


symbol description
gtf2f1 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

NR:

description
PREDICTED: general transcription factor IIF subunit 1 isoform X1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043229474.1 True 1932 mRNA 0.49 14 12895326 12900216

Neighbor


gene id symbol gene type direction distance location
alkbh7 NA coding upstream 123144 12770572 ~ 12772182 (+)
ier2a LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 coding upstream 215569 12678396 ~ 12679757 (+)
LOC122329583 nacc1,LOC107690702,LOC103910274,LOC107737738,LOC107689628,LOC107554144,LOC107723200,LOC103025552 coding upstream 218663 12661681 ~ 12676663 (+)
mpp2a mpp2a,LOC107582977,LOC107758486,LOC107737744,LOC108434916,LOC106600860,LOC106607467 coding upstream 405264 12477842 ~ 12490062 (+)
pyya pyya,LOC107689636,LOC107554138,LOC107583099,LOC107758485,LOC107695175 coding upstream 418054 12474069 ~ 12477272 (+)
LOC122332118 alkbh7,LOC107723204,LOC107690706 coding downstream 72261 12972477 ~ 12974627 (+)
aldh3b1 aldh3b1,LOC107698763,LOC107601228,LOC108444046,LOC108258475 coding downstream 203060 13103276 ~ 13107847 (+)
carm1 carm1,LOC107698604,LOC107689626,LOC107753277,LOC107724424 coding downstream 215815 13116031 ~ 13129608 (+)
timm29 zgc:110046,LOC107736790,LOC107601237,LOC107698646,LOC107753167,LOC107689699,LOC107578239 coding downstream 234454 13134670 ~ 13136750 (+)
slc25a23b slc25a23b,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC107753149,LOC105898533,LOC108444036 coding downstream 254291 13154507 ~ 13162307 (+)
G19575 LOC107690704 non-coding upstream 208955 12682818 ~ 12686371 (+)
G19579 NA non-coding upstream 213761 12681258 ~ 12681565 (+)
G19287 NA non-coding upstream 666806 12227935 ~ 12228520 (+)
G19274 NA non-coding upstream 760369 12132629 ~ 12134957 (+)
G19263 NA non-coding upstream 776551 12118538 ~ 12118775 (+)
G19656 NA non-coding downstream 97001 12997217 ~ 13056733 (+)
G19629 ighv4-5 non-coding downstream 105594 13005810 ~ 13096854 (+)
G19627 NA non-coding downstream 159944 13060160 ~ 13061606 (+)
G19636 NA non-coding downstream 160901 13061117 ~ 13072599 (+)
G19624 NA non-coding downstream 171917 13072133 ~ 13076694 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 366523 12519837 ~ 12528803 (+)
G19326 NA other upstream 381605 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 580280 12303364 ~ 12315046 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other upstream 645329 12232427 ~ 12249997 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other upstream 777387 12114048 ~ 12117939 (+)
si:dkey-204f11.64 LOC105898698 other downstream 212261 13112477 ~ 13114856 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 798321 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 1095745 13995961 ~ 14002378 (+)
G19973 NA other downstream 1149274 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 1218251 14118467 ~ 14119570 (+)

Expression



Co-expression Network