ca10b (ca10b,LOC107753024,LOC107601251,LOC107710000,LOC107689615,LOC107590442,LOC105907875,LOC108442538)


Basic Information

Item Value
gene id ca10b
gene name ca10b,LOC107753024,LOC107601251,LOC107710000,LOC107689615,LOC107590442,LOC105907875,LOC108442538
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13501604 ~ 13520389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229520.1
CCGCCTGCAGGGGGATTAGCACGCGCTAAACCTCAGATCCGCGCGCTCTGTCAGGTAACGCCGCAAACACCGTCCACGACTAACCTAAGAGCACAAACAAGGATAAATAAAGCCGTTGCTTTGGTCTAATTTGCGTTTCGCCGCACCAGCCGACAGGTCGCCGTCTGGACGCGCAAGTTTCTACGCGGTGAACTGTCAAGTGGTTTTTTGGTCCGGTACATTTCAGAGTAAATCTGCGCGGTGGGTCGCGTCTTTTGGGTGAGGAAGATGTTCTTCGTATTTGAGAGTGACGGGAGCGCGCGAGACGGAATCGCTCGCGGGGAATGACGCTTCAGACTTTGACCAAGTGTTATCAAGTTAATTACCTGATGGACTAAATGAAGAATGCCGCACGTTTGGGAGTTCATTCTGATTCTCAACATTAATGTCGTCTTTGTAGAAGCACAGCCAGTGTCATCAAAGCTGCACGATGGTTGGTGGGCATACAAAGATGTTGTCCAGGGGAGCTTTATACCAGTGCCATCTTTCTGGGGACTAGTGAACACTGCTTGGAACCTGTGCGCGATTGGGAAGAGACAGTCGCCAGTCAACATCGAAACCAGTCGAATGATTTTCGACCCTTTCCTCAATCCGCTACGGCTCAATGCAGGGCAACGTAAGGTCAGTGGAACAATGTATAACACGGGCCGCCATGTGTCCCTGCGCCCAGACAAGTCACACCTGGTGAACATCTCTGGAGGGCCACTGAGCTACAGCTACAGGCTGGAAGAGATTCGGCTTCACTTTGGCGCCGAGGACAGTCGGGGCTCCGAGCACCTGCTCAACGGCCAGGCCTTCCCTGGAGAGgtGCAGCTCATCCATTATAATCaggatttgtatttaaattacagtGATGCCGTCCGGAGTCCTAATGGAATAGCAGTTGTTTCTATCTTCATGAAGATTTCAGAGCctacaaatgcatttctaaacCGCATGCTGAACAGAGAGACCATTACGAGGATTACCTATAAACatgatgcataCTTACTGATGGGGCTCGATATTGAGGAACTGTATCCCGAAACCTCCCGTTTTATCACATATGAAGGGTCGATAACTATTCCACCGTGCCTTGAGACAGCAACCTGGATTTTAATGAATAAGCCAATTTACATCTCGCAGATCGAGATGCAGTCCCTTCGTCTCCTCAGCCAAAACCAGCCCTCCCAGATCTTCCTCAGTATGGGTGACAACATGCGGCCGACGCAGCCACTGCACCAGCGCTGCATCCGCACCAACATCAACTTCAGTCAGAGACGGGACTGCCCTAACAACCGCGTGCTGAGGCCCCAGTACAGAGTGAATGAATGGCTTCTGAAATAACAGCTTGACTTGAATTAGTTACTACAACAATCTGGGAGCGACTGAAGAATATGGCCGACAGTCCATGAAGAAAACGTCTCAACAGAGGACtcttcaataataataattaaaaaaaaaatatataattacttttatacttgtttatatgtttataacAATGTATGTCCAAGACATTGAAAGCAGTTGCTTAGAGTATTCAGTCAGACAGGACTGGTTCTCAGTGACCCTGGCTCTTGAGGTAGCGTCTGCTCTCATTCTTTGCATCTGAACAGCAGGTGCAATCAAGCCTTGTTGCAGCGAATGGAAATCCACCTTTGCTCTACGCACAGGGATTTAAACTTTACTTTGACACGAGGCAAACGAAAGGATTTCAAGCCTATATCTTGGACTATTCGAAGCATGTTGCCTTCTCTACGTAAGTGTTTACAGTGCTAAATTAATTGAGTGATATCTGCCCAATAAATCTTTGAAGTGGTCA

Function

symbol description
ca10b Predicted to enable hydro-lyase activity. Acts upstream of or within swimming behavior. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Orthologous to human CA10 (carbonic anhydrase 10).

NR:

description
PREDICTED: carbonic anhydrase-related protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229520.1 True 1843 mRNA 0.47 9 13501604 13520389

Neighbor

gene id symbol gene type direction distance location
itga3a LOC107601250,LOC107689616,LOC107688090,LOC107709989 coding upstream 185 13473508 ~ 13501419 (+)
cdk5r1a cdk5r1a,LOC107709992,LOC107689695,LOC107601231,LOC107688088,LOC107753032,LOC108442536 coding upstream 33453 13462052 ~ 13468151 (+)
dusp3b dusp3b,LOC107753093,LOC107688089,LOC107590411,LOC107709997 coding upstream 106641 13391973 ~ 13394963 (+)
dlx4a dlx4a,LOC107709990,LOC107689696,LOC107590410,LOC107753083,LOC107688148 coding upstream 110098 13386428 ~ 13391506 (+)
znf207a znf207a,LOC107590415,LOC107698690,LOC107601239,LOC107689623 coding upstream 331350 13163996 ~ 13170254 (+)
smarce1 LOC107590406,LOC107752998,LOC107601252,LOC107709999,LOC107689614 coding downstream 826 13521215 ~ 13528518 (+)
prkcbb prkcbb,LOC107601253,LOC107689613,LOC107710001,LOC107590404,LOC107752983,LOC107688094 coding downstream 12181 13532570 ~ 13633527 (+)
cacng3b cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095,LOC108436978 coding downstream 128905 13649294 ~ 13683496 (+)
LOC122339456 LOC107590441,LOC107721518,LOC107654452,LOC107719974,LOC107688138,LOC107601257 coding downstream 198547 13718936 ~ 13764372 (+)
rpusd1 rpusd1,LOC107720093,LOC107654465,LOC107590456,LOC107688151 coding downstream 246802 13767191 ~ 13769945 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding upstream 58026 13409739 ~ 13443578 (+)
G19798 NA non-coding upstream 59455 13441686 ~ 13442149 (+)
LOC122341620 NA non-coding upstream 89686 13408320 ~ 13411918 (+)
G19780 NA non-coding upstream 137874 13362886 ~ 13363730 (+)
G19777 NA non-coding upstream 141269 13359319 ~ 13360335 (+)
G19890 NA non-coding downstream 267444 13787833 ~ 13792555 (+)
G19891 NA non-coding downstream 294964 13815353 ~ 13818222 (+)
LOC122342149 NA non-coding downstream 393537 13913926 ~ 13920269 (+)
G19963 NA non-coding downstream 420227 13940616 ~ 13943491 (+)
G20009 NA non-coding downstream 579784 14100173 ~ 14101904 (+)
si:dkey-204f11.64 LOC105898698 other upstream 386748 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 513691 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 972801 12519837 ~ 12528803 (+)
G19326 NA other upstream 987883 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 1186558 12303364 ~ 12315046 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 178148 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 475572 13995961 ~ 14002378 (+)
G19973 NA other downstream 529101 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 598078 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 599796 14120185 ~ 14123128 (+)

Expression


Co-expression Network