lpar2a (lpar2a,LOC107711250,LOC107672473,LOC107587950,LOC107672513,LOC107757366,LOC107670534)


Basic Information

Item Value
gene id lpar2a
gene name lpar2a,LOC107711250,LOC107672473,LOC107587950,LOC107672513,LOC107757366,LOC107670534
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9129812 ~ 9132805 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229550.1
GCCTATTGAAACCGAAACGAATAAATATGAAAACGGCTTGCCATACACGCTCCGTAGCAGATACTGGAAACCgaattgaaatatttactttCTGAACCTGTCACCGAACGCTTTGGACAACGGTCCGGCGTTCATTGGGTCCGCGGGCGGTGAGTCCATCAAATCAGGTTTCGGGGAGGCGCACGAGGGGGATCTCGGCGGATCTCGGATCTCTTGAAGATTTCTCCACGAGCTCCGCCAGATGAGCGTTTCCGGCGAGCGCCCGAGTGCCAAAACAACGAGCCGCGGCCAGCTCCGAGCTGCTGTTACGCGTGTTTCCTTTGTTTGCTCTAAAGCTCTGGCAACGGGTtggaaaacaataaaaggcACGCCTTGAGAGCAGCAGCACCGGCAcggtttttgaaatgtaaaagcaTTATTTCAAATGGCGGAGGATCTCATTATCAGGATTACAGCGTCGGGGAGAACTGGGATCAACTAAATGGTGCATCTGATTTACATCAACTACTTGTCTAATAATGCTCTTTAATTCTACCTGTGAGGCTTATGACAATCCAGTGTCCTACTTCTACAACAAGACTGGCAAGCCCATCAGCACTAACTGGCGCACTCATGACTTTATCGTGGTGGGCCTCGGGCTCCCGATCTGTGTCTTTATTATTCTGGCCAATATGTTGGTCATAGCGGCCATAATCGTCAACCGGCAGTTCCACTTTCCCATTTATTACCTACTTGGGAACATGGCGGCGGCGGACCTCTTCGCCGGCATCTCGTATCTCTACCTGGTGTTTCACACCGGCCCGTGGACCATCGGTTTGACCATCAAAGAGTGGTTCATTCGCGGCGCTTTGATCAACATGAGCCTGACCGCGTCTGTGGTCAACCTGCTGGCGGTGGCTGTGGAGCGCCATCAGACCATTTTCACCATGCAGCTGCACAGCACCATGACCAGGAGGCGCGTGGTGATGCTGATAGTCACCATCTGGTTGGTGGCCGTCGTCATGGGTTTGGTGCCCACCATGGGCTGGAACTGTGTCTGCGACCTGTCCACCTGCTGCACGGTTGCGCCGCTGTATTCCCGCAGCTTCCTAGTGTCCTGGGCCATCCTCAACCTCATGGCCTTCTTCATCATGGTGGCCGTTTACACGCACATCTTCATCTACGTTCGCCGGCGGAGCCAAGTAATGTCCCCGCACACGGATCAGCCCTCGAACAATCAGACCGTTATCAGCCTCATGAAGACCATGTCTATGATTCTGGGAGCCTTCGTGATCTGTTGGACTCCAGGCCTTGTGATCTTGTTGCTGGACGGCCTCAGCTGCAGTGAATGTCAGGTTCTCAAATACGAAAAGTACTGCCTGGTTCTGGCCGAGTGTAACTCTCTGGTGAACCCCATCATCTACTCGTTCCGGGACGAGGACATGAGGACCACCTACAAACGCATTCTCTGCTTCCCTTGGAGAAGAATGCGCCAGCACGAGGGGCCTTCTGGCATCCGCTTCGAGCCTGTGAAAACAGGGGCACCCTCCgagaaaaacagcaataacTCCATCAGTTTAGAGCCCAGTTCGCCACAAAGCCTATTGTCTTCATAGAAAAAGTATTTGTCagtgtaaataaatgactttgtaTTTGCTTAGTGAAATGATCACAGCTTGTACAAAGAGTAAATAATACTTCATTTTT

Function

symbol description
lpar2a Enables lysophosphatidic acid receptor activity. Acts upstream of or within angiogenesis and negative regulation of erythrocyte differentiation. Predicted to be located in cell surface; endosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axis and yolk syncytial layer. Orthologous to human LPAR2 (lysophosphatidic acid receptor 2).

NR:

description
lysophosphatidic acid receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG:

id description
K04291 LPAR2, EDG4; lysophosphatidic acid receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229550.1 True 1686 mRNA 0.51 3 9129812 9132805

Neighbor

gene id symbol gene type direction distance location
LOC122329549 chchd5,LOC107711181,LOC107757370,LOC107672451,LOC107670463 coding downstream 63009 9065001 ~ 9066803 (-)
LOC122332528 LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532 coding downstream 137893 8989124 ~ 8991919 (-)
LOC122341290 LOC107725336,LOC107573036,LOC107698059,LOC107758357,LOC108425688,LOC107661082,LOC107676879 coding downstream 300321 8805688 ~ 8829491 (-)
LOC122330990 LOC107656950 coding downstream 415617 8712478 ~ 8714195 (-)
pde6hb LOC107724721 coding downstream 592231 8535111 ~ 8537581 (-)
nr5a5 nr5a5,LOC107711258,LOC107672469,LOC107587942,LOC107757363,LOC107670482,LOC107563324 coding upstream 113571 9246376 ~ 9251223 (-)
soul5 LOC107672470,LOC107587943,LOC107757348,LOC107563322 coding upstream 119506 9252311 ~ 9254408 (-)
shfl zgc:171711,LOC107757360,LOC107563321,LOC107670471 coding upstream 122636 9255441 ~ 9260491 (-)
notch3 notch3,LOC107711261,LOC107587940,LOC107757359,LOC107670473,LOC107563318 coding upstream 132968 9265773 ~ 9294849 (-)
rdh8a rdh8a,rdh8,LOC107587939,LOC107672484,LOC107711264,LOC107757358,LOC107563317,LOC107670529 coding upstream 200291 9333096 ~ 9341003 (-)
G18320 NA non-coding downstream 2083 9124956 ~ 9127729 (-)
G18326 NA non-coding downstream 107506 9021920 ~ 9022306 (-)
LOC122342131 NA non-coding downstream 121813 9007613 ~ 9007999 (-)
G18273 NA non-coding downstream 127400 9002137 ~ 9002412 (-)
LOC122341612 NA non-coding downstream 356407 8767455 ~ 8773405 (-)
G18357 NA non-coding upstream 809 9133614 ~ 9133813 (-)
G18378 NA non-coding upstream 49734 9182539 ~ 9183271 (-)
G18388 NA non-coding upstream 65803 9198608 ~ 9199702 (-)
G18426 LOC105357980 non-coding upstream 280599 9413404 ~ 9414007 (-)
G18439 olfm2,olfm2a non-coding upstream 348516 9481321 ~ 9485355 (-)
zgc:113210 NA other downstream 122369 8992714 ~ 9007443 (-)
fmc1 NA other downstream 730984 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 910757 8218902 ~ 8219055 (-)
LOC122339740 NA other downstream 920719 8207698 ~ 8209093 (-)
LOC122334075 NA other downstream 958151 8058631 ~ 8171661 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 1238 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 293767 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 861028 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1261509 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1879131 11011936 ~ 11064598 (-)

Expression


Co-expression Network