wdr48b (wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656)


Basic Information

Item Value
gene id wdr48b
gene name wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4812939 ~ 4820656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229580.1
AACACTTCGACGGATTCCGCTTTCGTCCGGAAGTGACGCATTCACTGATTGTCAACATGTAAGATGGCGACCCATCACAGACAGAACGCTGCTGGACGGAGAAAAGTCCAGGTTTCCTACGTGATTAGAGACGAGGTGGAGAAGTTTAATCGTAACGGTGTGAACGCTCTTCAGCTGGATCCTGCTCTCAACAGACTCTTCACAGCCGGCCGAGATTCCATCATCAGGATATGGAGTGTCAATCAACACAAACAGGATCCTTACATTGCTTCAATGGAGCATCACACGGACTGGGTGAATGACATCATCCTCTGTTGTAATGGAAAAACACTGATATCTGCCTCCTCGGACACCACCGTGAAAGTCTGGAATGCACACAAAGGCTTCTGCATGTCCACGCTACGGACACACAAGGACTACGTCAAAGCTTTAGCATATGCAAAGGACAAGGAGCTGGTGGCATCGGCCGGACTGGACAGACAGATCTTCCTATGGGATGTGAACACACTGACAGCTCTCACCGCCTCCAATAACACAGTCACCACATCCTCGCTGAGTGGAAACAAGGACTCCATCTACAGTCTGGCCATGAACCAGACAGGAACTGTGATCATCTCAGGATCTACGGAGAAGGTTTTGAGGGTCTGGGATCCACGGACATGTGCTAAACTAATGAAGCTGAAAGGCCACACTGACAATGTCAAATCTTTATTGTTAAACAGAGACGGCACTCAGTGTCTATCTGGTAGCTCGGACGGAACGATACGCTTGTGGTCTCTCGGTCAGCAGCGGTGCATCGCCACATACCGGGTCCACGATGAGGGTGTGTGGGCGCTTCAGGTGAACGAGGCCTTCACGCACATCTACTCCGGCGGACGTGACCGAAAAATCTACTGCACAGATCTGCGTAACCCTGACTTACGTGTGCTCATATGTGAGGAGAAAGCTCCCGTCCTGAAGATGGAATTGGACAAATCAGCTGATCCTCCTCAAGCTATTTGGGTGTCAACAACTAAATCGTTTGTAAACAAATGGTCTCTGAAGGGCATGCATAACTTCAGAGCGTCTGGAGAATACGACAACGACTGCAGCGCCCCTCTAACTCCACTGTGTACTCAGCCAGAGCAGGTCATCAAAGGAGGCACCAGCATTGTTCAGTGTCATATTCTCAATGACAAGAGGCACATACTGACTAAAGACTCTAATAACAGTGTGGCATTCTGGGATGTCCTCAAGGCATGTAAGGGGGAAGACCTGGGAAAAGTGGACTTTgatgaagaaattaaaaagaGGTTCAAGATGGTCTATGTACCGAACTGGTTTTCTGTAGATCTCAAAACAGGGATGCTGACCATCACGCTGGATGAAAGTGATTGTTTTGCAGCGTGGGTGGCAGCTAAAGATGCTGGTTTTACAAGCCCAGACGGCTCTGATCCAAAGTTGAATCTGGGTGGGCTGCTCCTCCAGGCGCTGTTAGAGTTTTGGCCCAGAACTCATATAAACCCAATGGAAGAGGAGGAAAGTGAACTCAACCACGTAAACGGTGAACAGGAGAGTCGAATTCAAAAGGGCAACGGCTACTTCCAGGTTCCTCCACACACTCCTGTCATCTTTGGTGAAGCTGGAGGAAGAACATTATTTAGGTTATTGTGCCGTGACTCTGGAGGAGAGACAGAGTCCATGTTACTGAATGAAACCGTACCTCAGTGGGTAATTGATATCACCGTAGATAAAAACATGCCAAAATTCAACAAGATCCCATTCTACCTCCAACCTCATTCATCATCTGGGGCCAAAACACTCAAAAAGGACCGTCTGTCTGCTAGCGACATGCTTCAGGTGCGGAAAGTGATGGAGCACGTCTACGAGAAGATCATCAACCTCGACACAGAGTCACAGACCACCAGCTCCTCGGCCAATGACAAGCCGGGAGAgcaggagaaagaggaagacGTGGCGGTGATAGCCGAAGAGAAGATTGAGCTTATGTGTTTAGATCAGGTTTTGGATCCAAACATGGACCTCAGGACTGTAAAGCATTTCATCTGGAAGAGCGGTGGAGACCTCACCCTCCATTACCGACAGAAATCCACGTGAGCCCTTCTGACCACTGTACAGACCCCAATCACCTTCAACCCGCATCGCTTTGACTTCCAGAAGAAGCGTCCCAGAATGCCAATGCTTGGGATTAATGACCGAGCCAGCAGAAAGATCTGACCGAGCGCGGAAGGTTAAAGACTGACTGCAGAGCGATGCAGTTGTTGTGACGTTCTGTGAACTACGACTTCAATATAAGTCTGCCTTTATTgcaatgattatatattttttgtatatttcataaTGTCTTGTCCATTTTAACACGAGTCATGATGACGATGATGCACACGAGTACTTCCGTTCTCAGACATTCCAGAGGCTTTCATCCAGATCCAAATCAGTTAGTCTTTGAAGCTGTccgttttgctttttttcaccCAAGTAAacaatgtactttttttctagATTTAATGTcgttataatttattttaagatgttttttgtaCAAGAAATCAAAACTGTCCGACAAGGAACATGAAGTCAGCAAGGAAAATTTTAATGTGCAGTTGCATAATTTACTGCGTAAGTTTAATGTGTATTTCTCATCTGATTGTTAGTTGGTTTCTGAGCGTTACCGTCATCTTACCATAACTTCTGAGAAATGTCTCTGACCTTGTCAACTAACTGacattttttgtgaataaaagttgaaacagtt
>XM_043229589.1
TTGTCAACATGTAAGATGGCGACCCATCACAGACAGAACGCTGCTGGACGGAGAAAAGTCCAGGTTTCCTACGTGATTAGAGACGAGGTGGAGAAGTTTAATCGTAACGGTGTGAACGCTCTTCAGCTGGATCCTGCTCTCAACAGACTCTTCACAGCCGGCCGAGATTCCATCATCAGGATATGGAGTGTCAATCAACACAAAGATCCTTACATTGCTTCAATGGAGCATCACACGGACTGGGTGAATGACATCATCCTCTGTTGTAATGGAAAAACACTGATATCTGCCTCCTCGGACACCACCGTGAAAGTCTGGAATGCACACAAAGGCTTCTGCATGTCCACGCTACGGACACACAAGGACTACGTCAAAGCTTTAGCATATGCAAAGGACAAGGAGCTGGTGGCATCGGCCGGACTGGACAGACAGATCTTCCTATGGGATGTGAACACACTGACAGCTCTCACCGCCTCCAATAACACAGTCACCACATCCTCGCTGAGTGGAAACAAGGACTCCATCTACAGTCTGGCCATGAACCAGACAGGAACTGTGATCATCTCAGGATCTACGGAGAAGGTTTTGAGGGTCTGGGATCCACGGACATGTGCTAAACTAATGAAGCTGAAAGGCCACACTGACAATGTCAAATCTTTATTGTTAAACAGAGACGGCACTCAGTGTCTATCTGGTAGCTCGGACGGAACGATACGCTTGTGGTCTCTCGGTCAGCAGCGGTGCATCGCCACATACCGGGTCCACGATGAGGGTGTGTGGGCGCTTCAGGTGAACGAGGCCTTCACGCACATCTACTCCGGCGGACGTGACCGAAAAATCTACTGCACAGATCTGCGTAACCCTGACTTACGTGTGCTCATATGTGAGGAGAAAGCTCCCGTCCTGAAGATGGAATTGGACAAATCAGCTGATCCTCCTCAAGCTATTTGGGTGTCAACAACTAAATCGTTTGTAAACAAATGGTCTCTGAAGGGCATGCATAACTTCAGAGCGTCTGGAGAATACGACAACGACTGCAGCGCCCCTCTAACTCCACTGTGTACTCAGCCAGAGCAGGTCATCAAAGGAGGCACCAGCATTGTTCAGTGTCATATTCTCAATGACAAGAGGCACATACTGACTAAAGACTCTAATAACAGTGTGGCATTCTGGGATGTCCTCAAGGCATGTAAGGGGGAAGACCTGGGAAAAGTGGACTTTgatgaagaaattaaaaagaGGTTCAAGATGGTCTATGTACCGAACTGGTTTTCTGTAGATCTCAAAACAGGGATGCTGACCATCACGCTGGATGAAAGTGATTGTTTTGCAGCGTGGGTGGCAGCTAAAGATGCTGGTTTTACAAGCCCAGACGGCTCTGATCCAAAGTTGAATCTGGGTGGGCTGCTCCTCCAGGCGCTGTTAGAGTTTTGGCCCAGAACTCATATAAACCCAATGGAAGAGGAGGAAAGTGAACTCAACCACGTAAACGGTGAACAGGAGAGTCGAATTCAAAAGGGCAACGGCTACTTCCAGGTTCCTCCACACACTCCTGTCATCTTTGGTGAAGCTGGAGGAAGAACATTATTTAGGTTATTGTGCCGTGACTCTGGAGGAGAGACAGAGTCCATGTTACTGAATGAAACCGTACCTCAGTGGGTAATTGATATCACCGTAGATAAAAACATGCCAAAATTCAACAAGATCCCATTCTACCTCCAACCTCATTCATCATCTGGGGCCAAAACACTCAAAAAGGACCGTCTGTCTGCTAGCGACATGCTTCAGGTGCGGAAAGTGATGGAGCACGTCTACGAGAAGATCATCAACCTCGACACAGAGTCACAGACCACCAGCTCCTCGGCCAATGACAAGCCGGGAGAgcaggagaaagaggaagacGTGGCGGTGATAGCCGAAGAGAAGATTGAGCTTATGTGTTTAGATCAGGTTTTGGATCCAAACATGGACCTCAGGACTGTAAAGCATTTCATCTGGAAGAGCGGTGGAGACCTCACCCTCCATTACCGACAGAAATCCACGTGAGCCCTTCTGACCACTGTACAGACCCCAATCACCTTCAACCCGCATCGCTTTGACTTCCAGAAGAAGCGTCCCAGAATGCCAATGCTTGGGATTAATGACCGAGCCAGCAGAAAGATCTGACCGAGCGCGGAAGGTTAAAGACTGACTGCAGAGCGATGCAGTTGTTGTGACGTTCTGTGAACTACGACTTCAATATAAGTCTGCCTTTATTgcaatgattatatattttttgtatatttcataaTGTCTTGTCCATTTTAACACGAGTCATGATGACGATGATGCACACGAGTACTTCCGTTCTCAGACATTCCAGAGGCTTTCATCCAGATCCAAATCAGTTAGTCTTTGAAGCTGTccgttttgctttttttcaccCAAGTAAacaatgtactttttttctagATTTAATGTcgttataatttattttaagatgttttttgtaCAAGAAATCAAAACTGTCCGACAAGGAACATGAAGTCAGCAAGGAAAATTTTAATGTGCAGTTGCATAATTTACTGCGTAAGTTTAATGTGTATTTCTCATCTGATTGTTAGTTGGTTTCTGAGCGTTACCGTCATCTTACCATAACTTCTGAGAAATGTCTCTGACCTTGTCAACTAACTGacattttttgtgaataaaagttgaaacagtt
>XM_043229598.1
CGCATTCACTGATTGTCAACATGTAAGATGGCGACCCATCACAGACAGAACGCTGCTGGACGGAGAAAAGTCCAGGAAAGTGTCGCCAAATATAGCGTCCGTGATATTTACAAAACGAAACATTTTCACCCTTGCAAGAAGTACTATGGTGTGACCACAATACAGTGATGATATGTAACGCAGCGGCGTTCAGTCAGTTTTAAGCGTTTCCACATGCTTTTTTGGGCCACGGTTTCCTACGTGATTAGAGACGAGGTGGAGAAGTTTAATCGTAACGGTGTGAACGCTCTTCAGCTGGATCCTGCTCTCAACAGACTCTTCACAGCCGGCCGAGATTCCATCATCAGGATATGGAGTGTCAATCAACACAAACAGGATCCTTACATTGCTTCAATGGAGCATCACACGGACTGGGTGAATGACATCATCCTCTGTTGTAATGGAAAAACACTGATATCTGCCTCCTCGGACACCACCGTGAAAGTCTGGAATGCACACAAAGGCTTCTGCATGTCCACGCTACGGACACACAAGGACTACGTCAAAGCTTTAGCATATGCAAAGGACAAGGAGCTGGTGGCATCGGCCGGACTGGACAGACAGATCTTCCTATGGGATGTGAACACACTGACAGCTCTCACCGCCTCCAATAACACAGTCACCACATCCTCGCTGAGTGGAAACAAGGACTCCATCTACAGTCTGGCCATGAACCAGACAGGAACTGTGATCATCTCAGGATCTACGGAGAAGGTTTTGAGGGTCTGGGATCCACGGACATGTGCTAAACTAATGAAGCTGAAAGGCCACACTGACAATGTCAAATCTTTATTGTTAAACAGAGACGGCACTCAGTGTCTATCTGGTAGCTCGGACGGAACGATACGCTTGTGGTCTCTCGGTCAGCAGCGGTGCATCGCCACATACCGGGTCCACGATGAGGGTGTGTGGGCGCTTCAGGTGAACGAGGCCTTCACGCACATCTACTCCGGCGGACGTGACCGAAAAATCTACTGCACAGATCTGCGTAACCCTGACTTACGTGTGCTCATATGTGAGGAGAAAGCTCCCGTCCTGAAGATGGAATTGGACAAATCAGCTGATCCTCCTCAAGCTATTTGGGTGTCAACAACTAAATCGTTTGTAAACAAATGGTCTCTGAAGGGCATGCATAACTTCAGAGCGTCTGGAGAATACGACAACGACTGCAGCGCCCCTCTAACTCCACTGTGTACTCAGCCAGAGCAGGTCATCAAAGGAGGCACCAGCATTGTTCAGTGTCATATTCTCAATGACAAGAGGCACATACTGACTAAAGACTCTAATAACAGTGTGGCATTCTGGGATGTCCTCAAGGCATGTAAGGGGGAAGACCTGGGAAAAGTGGACTTTgatgaagaaattaaaaagaGGTTCAAGATGGTCTATGTACCGAACTGGTTTTCTGTAGATCTCAAAACAGGGATGCTGACCATCACGCTGGATGAAAGTGATTGTTTTGCAGCGTGGGTGGCAGCTAAAGATGCTGGTTTTACAAGCCCAGACGGCTCTGATCCAAAGTTGAATCTGGGTGGGCTGCTCCTCCAGGCGCTGTTAGAGTTTTGGCCCAGAACTCATATAAACCCAATGGAAGAGGAGGAAAGTGAACTCAACCACGTAAACGGTGAACAGGAGAGTCGAATTCAAAAGGGCAACGGCTACTTCCAGGTTCCTCCACACACTCCTGTCATCTTTGGTGAAGCTGGAGGAAGAACATTATTTAGGTTATTGTGCCGTGACTCTGGAGGAGAGACAGAGTCCATGTTACTGAATGAAACCGTACCTCAGTGGGTAATTGATATCACCGTAGATAAAAACATGCCAAAATTCAACAAGATCCCATTCTACCTCCAACCTCATTCATCATCTGGGGCCAAAACACTCAAAAAGGACCGTCTGTCTGCTAGCGACATGCTTCAGGTGCGGAAAGTGATGGAGCACGTCTACGAGAAGATCATCAACCTCGACACAGAGTCACAGACCACCAGCTCCTCGGCCAATGACAAGCCGGGAGAgcaggagaaagaggaagacGTGGCGGTGATAGCCGAAGAGAAGATTGAGCTTATGTGTTTAGATCAGGTTTTGGATCCAAACATGGACCTCAGGACTGTAAAGCATTTCATCTGGAAGAGCGGTGGAGACCTCACCCTCCATTACCGACAGAAATCCACGTGAGCCCTTCTGACCACTGTACAGACCCCAATCACCTTCAACCCGCATCGCTTTGACTTCCAGAAGAAGCGTCCCAGAATGCCAATGCTTGGGATTAATGACCGAGCCAGCAGAAAGATCTGACCGAGCGCGGAAGGTTAAAGACTGACTGCAGAGCGATGCAGTTGTTGTGACGTTCTGTGAACTACGACTTCAATATAAGTCTGCCTTTATTgcaatgattatatattttttgtatatttcataaTGTCTTGTCCATTTTAACACGAGTCATGATGACGATGATGCACACGAGTACTTCCGTTCTCAGACATTCCAGAGGCTTTCATCCAGATCCAAATCAGTTAGTCTTTGAAGCTGTccgttttgctttttttcaccCAAGTAAacaatgtactttttttctagATTTAATGTcgttataatttattttaagatgttttttgtaCAAGAAATCAAAACTGTCCGACAAGGAACATGAAGTCAGCAAGGAAAATTTTAATGTGCAGTTGCATAATTTACTGCGTAAGTTTAATGTGTATTTCTCATCTGATTGTTAGTTGGTTTCTGAGCGTTACCGTCATCTTACCATAACTTCTGAGAAATGTCTCTGACCTTGTCAACTAACTGacattttttgtgaataaaagttgaaacagtt

Function

symbol description
wdr48b Predicted to enable double-stranded DNA binding activity; single-stranded DNA binding activity; and ubiquitin binding activity. Predicted to be involved in double-strand break repair via homologous recombination; positive regulation of nitrogen compound metabolic process; and protein deubiquitination. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human WDR48 (WD repeat domain 48).

NR:

description
PREDICTED: WD repeat-containing protein 48 isoform X1

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K15361 WDR48, UAF1; WD repeat-containing protein 48

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229580.1 False 2755 mRNA 0.46 19 4812939 4820656
XM_043229589.1 False 2704 mRNA 0.46 19 4812987 4820656
XM_043229598.1 True 2875 mRNA 0.46 20 4812975 4820656

Neighbor

gene id symbol gene type direction distance location
LOC122332276 urgcp,LOC107662982 coding upstream 470 4800795 ~ 4812469 (+)
LOC122334471 NA coding upstream 13789 4795442 ~ 4799150 (+)
sema4e LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253 coding upstream 25190 4773535 ~ 4787749 (+)
stap2a stap2a,LOC107757807,LOC107600228,LOC107713653,LOC107698505,LOC108280350,LOC107599279,LOC108433098 coding upstream 39070 4763416 ~ 4773869 (+)
sh3gl1a sh3gl1a,LOC107600226,LOC107713652,LOC107698500,LOC107662987,LOC107599254 coding upstream 51642 4744833 ~ 4761297 (+)
LOC122341768 coa1,LOC107600219,LOC108428892 coding downstream 6781 4827437 ~ 4830481 (+)
LOC122341832 NA coding downstream 71459 4892115 ~ 4894607 (+)
LOC122341982 zgc:112320,pde6g,LOC107718621,LOC107660259,LOC107661785,LOC107553649 coding downstream 87695 4908351 ~ 4936740 (+)
si:dkey-282h22.5 NA coding downstream 131845 4952501 ~ 4957859 (+)
antkmt fam173a,LOC107553674 coding downstream 137356 4958012 ~ 4961980 (+)
G17003 NA non-coding upstream 18905 4792546 ~ 4794034 (+)
G16991 NA non-coding upstream 158685 4604054 ~ 4654254 (+)
G16990 NA non-coding upstream 162301 4602024 ~ 4650638 (+)
LOC122341099 NA non-coding upstream 163768 4647091 ~ 4649171 (+)
G16984 LOC107757310 non-coding upstream 198509 4556821 ~ 4614430 (+)
G17018 LOC107715650,LOC107550229 non-coding downstream 44552 4865208 ~ 4867318 (+)
LOC122333539 NA non-coding downstream 78183 4898839 ~ 4903279 (+)
LOC122341984 NA non-coding downstream 92038 4912694 ~ 4914493 (+)
G17026 NA non-coding downstream 171340 4991996 ~ 5035379 (+)
LOC122341773 NA non-coding downstream 386588 5207244 ~ 5211693 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 266372 4470732 ~ 4546567 (+)
G16979 NA other upstream 350665 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 374738 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 407555 4357032 ~ 4405384 (+)
G16672 NA other upstream 779413 3969515 ~ 4033526 (+)
G16981 NA other downstream 85000 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 489837 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 595102 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 736352 5557008 ~ 5565974 (+)
G17302 NA other downstream 776443 5597099 ~ 5598232 (+)

Expression


Co-expression Network