LOC122332528 (LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532)


Basic Information

Item Value
gene id LOC122332528
gene name LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8989124 ~ 8991919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229851.1
GGGGAAAGAGCCAGCGGATTTCTGGAATGCTATCGGACCACAGGACAGGAAGTCATATGACTGCATGCTACAAGATCCTGGTAAATTTAATTTTACCCCCCGCCTTTATCACCTGAGTGCCCAGTCAGGAACTTTCGTAGGGGTGGAGCTTATTAGCCCCTCCCACGTGAATGGTGTCATTACAGCAATGCCCTTCCTCCAGGATAAGTTATATGCCGTGCCACATCCAGCACTGTTCCTGCTGGATAACTATCTAGAGGTGTATTTATGGCAAAGTTGTGAATCTTCGGTCTCACAGCGCTCTCACTGGGACAAAGAGAAGAAGTGTGCCATGGAGACCGCTTTACAGTACTGCAAAGAGAGGAATCCCAGGCGGCCTCCCATGGCGTATCTTATCGATGAAGGGGCGGAGCCTCTCACCTTTACTAATATATTCCCTTCATGGGACATGAGACTGACACAGGAAGCACAGGACTGCACGGCGTGTAAAAAGCTAACTTTGGTGCAGGATGCTCTAGCTGCTGTTAATAAGACCCAGTTCCCCCTCAAAGATCTGCTGAAGAGACCTTTACCCGAAGGAGTGGATCCTTTACACCTGGAGAACTACCTGTCTCAGCACGATTTCAAGgttgCTTTGGGAATGACATGGAACGACTACAACTGTCTATCAGATTTACAGAAAATGGACCTGAAGAAAAGTAAAGGACTTTACTGAGTGTCAGCAGCATTTTAAAGATGTGTTTGTAAGATGGCACTCATGTGTACAGTGTAACTGTGAGTGTGTTAAacagtgagtgtgagtgtgtgtcctTTCAGTCcgctgctttttttaatgcctaTTGTCCAGCGCTCGTTTTGGCCAAAAGCTTTCTACTCAAAGCTAGACAGAACTGTTTTACTCTGACTTTGAGAAATAGCGGtcgtgtttttcttttcttccctcCCTTCCTCCACTGCAGCTGTTTCTCCTCCctctttcttcatctctccCTGTCTGCCTCCTCTCTCCACACAAAGCAGCACATGTGAGGTCCGATTGTTTCACTGAACTTACAGCTGAATttagtaatgtttattttaaaataaaaatatcatgaCATCTTTTCGCTGTGAAACATTTATTCACCTTTACAAATCTCAAATGCATAAACCGTTTGAGAATCAGAGAAcaaacagagaaacaaacaagaaaTGTCAGTAACAAAGTTGCTCCGAGAGGAAATGAAAAGAGGAAATACTCAATCAATAACTGAATGTGCAATATATTCTTAGCATCGAAACTTGAAATTTGAATATAATACATGAAATGAGAGAGTCTTGAATGTGTGTGGCTGTTGAAAGTGTGGTGGGGGTTGAGGGAAGGAATTAGTGTGGATTTAGACTTCATGTGACTCTGGTGAAAAATGACATGCCATGGCTAGATAGCAGGTGAACAAAAGAATGTAAGTTTTACTTGCTGCAAACTGTTCATAACCAGCTAGtcaactgttcaaaagtttggggttttatttgagaaataaaaatgtttcttcgggatgcattaaatggatcaaaaatgacagtaaagacgttaataattacaaaagatttctatttcaaataaatacttcgATATTTCAATGCTAAATACTAAAATACctcaaaatatatgtaaattattttaatccctcaaataaattgtttacataatttacagtggttttgatcaaataaattcagccttggtgagcataggaggctttgttaaaaaaatgttaaaacataatattactgaccccaaacctttgaatggtagcGTGCACATcatgagagggaaaaaaagtagAGAATGTACAAATACGAAAGTGCTGTAGGagaattttgtcattaattagtTACTTCATGTTGTGCTTTGTTTGTCTTAAGAGcaaaatgtaagatattttttgGATGacaaccaggaggcttgtgattgtcccattgactgtaaataa

Function

NR:

description
PREDICTED: supervillin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229851.1 True 1973 mRNA 0.40 6 8989124 8991919

Neighbor

gene id symbol gene type direction distance location
LOC122341290 LOC107725336,LOC107573036,LOC107698059,LOC107758357,LOC108425688,LOC107661082,LOC107676879 coding downstream 159633 8805688 ~ 8829491 (-)
LOC122330990 LOC107656950 coding downstream 274929 8712478 ~ 8714195 (-)
pde6hb LOC107724721 coding downstream 451543 8535111 ~ 8537581 (-)
LOC122341497 NA coding downstream 454082 8530826 ~ 8535042 (-)
zgc:65811 LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523 coding downstream 464345 8513413 ~ 8524779 (-)
LOC122329549 chchd5,LOC107711181,LOC107757370,LOC107672451,LOC107670463 coding upstream 73082 9065001 ~ 9066803 (-)
lpar2a lpar2a,LOC107711250,LOC107672473,LOC107587950,LOC107672513,LOC107757366,LOC107670534 coding upstream 137893 9129812 ~ 9132805 (-)
nr5a5 nr5a5,LOC107711258,LOC107672469,LOC107587942,LOC107757363,LOC107670482,LOC107563324 coding upstream 254457 9246376 ~ 9251223 (-)
soul5 LOC107672470,LOC107587943,LOC107757348,LOC107563322 coding upstream 260392 9252311 ~ 9254408 (-)
shfl zgc:171711,LOC107757360,LOC107563321,LOC107670471 coding upstream 263522 9255441 ~ 9260491 (-)
LOC122341612 NA non-coding downstream 215719 8767455 ~ 8773405 (-)
G18193 LOC107573033,LOC107758359,LOC107732521,LOC107569877 non-coding downstream 309967 8482647 ~ 8679157 (-)
G18273 NA non-coding upstream 10218 9002137 ~ 9002412 (-)
LOC122342131 NA non-coding upstream 15694 9007613 ~ 9007999 (-)
G18326 NA non-coding upstream 30001 9021920 ~ 9022306 (-)
G18320 NA non-coding upstream 133037 9124956 ~ 9127729 (-)
G18357 NA non-coding upstream 141695 9133614 ~ 9133813 (-)
fmc1 NA other downstream 590296 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 770069 8218902 ~ 8219055 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other downstream 771036 8054039 ~ 8218088 (-)
zgc:113210 NA other upstream 795 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 142124 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 434653 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 1001914 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1402395 10394314 ~ 10396341 (-)

Expression


Co-expression Network