zmp:0000001048 (zmp:0000001048,LOC107711259,LOC107670472,LOC107563320)



Basic Information


Item Value
gene id zmp:0000001048
gene name zmp:0000001048,LOC107711259,LOC107670472,LOC107563320
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9260905 ~ 9267730 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043229938.1
gttattatttgtgtgttgttgttgttggtatACAGACTCCAAATCCCAGGGTCCTCAGAACGCGACCTGTGCACGTGACTTGTTTCCACGGTGCCGCTCTCGCGCAGAACTCAGGCGCTCCGACTGAAAGGAGTTTATGGATGACAAGCGGTCTGTCAGCAGGACGCAGATTACATGTCATCCTTGATCTGAAGTTATGGGAACACGGAAGGTTTTGGTGACAGGATGCTCCTCTGGAATTGGTTTGGCACTGGCTGTCCGTCTTgcaaaagataaattaaaacGCTTCAAAGTTGTGGCCACTATGAGGGACCTGGATAAGAGAGAAGCTCTGGAGAGAGCAGCTGGAGAAAGCCTCAACAGATCCCTGGAGATCCGGCAGCTGGATGTCACCTGTGAGGACTCCATCAGAGAGTGTTTGAACAGCTTGCCAGATCGACGAGTGGGTGTGTTAGTGAATAATGCAGGTGTGGGTATGATTGGTCCTTTGGAGTGTCAGAATGTAAGTGCTATGCAGGAACTCTTCAACACTAATTTCTTTGTGCTGGTGAGACTGGTAAAAGAACTGCTCCCTGACATGAAGCGCCGTCAGAGCGGACACATCGTAGTGATGAGCAGTGTCCTGGGCATCCAGGgatTTCTTTTCAATGATGTATATGCTGCCTCTAAATTTGCTGTAGAGGGTTTTTGTGAGAGTCTTGCTGTGCAAGCTATGAAGTTCAATGTCAAGATGACATTAGTGGAGCCAGGCCCAGTTGTAACTGAGTTTCAGAAGAAAAGGTATGAAGAGGCAGAGAAGATGGATCTCTCGGAGACTGTCTTCCATCAGATTTACCTGCCATATTCACATAAAATTTTCAACTCAGTTGGGCAGACACCCGAAGAAGTGGCTGAGCAAACTCTCCAGCTGATTGTGTCCAAAAAACCCCCATTTCGTCATCAGACCAATCGTTTGTACATGCCACTGACTGCCATGAAGCATGCTGACCCAACGGGGCGACTGCCCATAGACGCATTCTACAAAATGATCTTCCAGCATGACCGCATGTTCAGTGCTACTCTGAGTATTCTACGCATACTTCACAGGGGAACAGGTGCTGCCTAAAAAGctctgaggtaaaaaaaaaaaaaaaaaaaaacatttcaaaagcatttcaGAGTTTTAAAGCCCCAAAATAGGTCGTGCTCattgaatatgaaaatatggcCAAACCACAGATAGCAAAAAAAATTCACTACTTGATCACTACCTATCATGAGCAAATACATAATGTTTAGTTGCAAACTGCAGTGTGTAATACTCTAgtgtctttttcattttgtaatggtttttcAACAGTCAAGGGGTAACTTACTTGCTCGTGTTTGCCCTGGAGCACATGTACAAGAGACTGAAGACCATTCAGTGCCCGATAAAGTCATGACGTTTTGTTCTTGCTTTGAAGAAGTAAAAGAATATTGGAAATAAATTGACATCTAGATGCTGTTCTACTTCACACTACCGTGAGGTTTAGGTTAGATAAATACGTAAATATGTTCTGTGCTGATAATACAGTTTATCCAGTATAAACAGCAGCTGCCACAAACATGCCACATGCTGCGATttgcactttctctctcttctgagGTGACAAAGCAGAAGCTAAGAAAGTATCCGATCATTgccatgtaaatatatttggaCCAGTTATGCAGTTCACCGACATACTATTATGATCTACAGTAAGTCAACATTTGTAGTGGATCAATAATCAAAATTGCCctaagacaagaacacatttttgttttaggaCTATTTTGATAAAAGGTTTTGATCTACTTCAACTGTTGACTAGTTTAAGTATATTTGAGATACTGACCATTGAGACTATttgaaaaatttacatttttttggcgtAGAACATTTACGTTTTAGTGAATTTAACCCTGACAGGTTTGTCAACCAATCACAAACACCTTTATCCACAATCCTACTAAATGCTGGACTCGGAATGCATGGaaatataaaagacaaataataaGACATTAGTGAAATGTAGTTTCTACCGCTTTATTAGAAGTAACATATTTTACAACTTTGTCTGTAGAAAGAAACtgtgaaaaactgtttatatacaatgattttaaactacttttaaacaaGTATAGGAAATTAATAATGACAATAGAAAATATCTATGGCTGTTCTAGTTATGCAAGACCAATACACAGTCACATCCTCACCTTAATAATGCTAATACAAAgtacatttactttttgttctttttagtacatattcattttttagaAACATAAGACTTCTCATAAACAAGTAGACCTAAACAaggtgaaatatatttacaaaaaggtactgaaatttcaaaaatatctgGAGAACTGTATCAAGAGAGCTGAAAAGTTCTGAATGAAAGGAAGACTTAGCTGGGTTAGCGAAGCTTAGTAGTACTTATGTAGGAAAACAAAGAGGTCCAGAATGTGCTCCAAAACCTCCACAAGCCTTGAAATGTGGTACATGAAGATTTTACAGTTTCATAGATGCACACTCGGTATTAAGCACGAAtactatttgaaaataataatgcatggcTTTATGTGCCATAATTCAGTGAAATGGATTTATTCCTCTTGGTGATAGCAAGAAAACAGCTGTCAGTGTCATCAAATGCAGGTCTTACAGTTGGGCAAATTGAAACGAGATGAACATATGGACATGTTACAGAAAGCCAGGGGCATCACTACATGGTAGCGTTTCCCATCTCACGCCTTCTGACCAGACACGACAGATGTCATCGTCTAGGCTGATAGGGTGGGAACTGCTAAAGATGCAGACAACGCTGCATGCTATATAACACCTCCCTGAGGAGTGACAGAGCAATAGCAGACCATTAGAACCCAGTTAGCCACGTACCCAACTCACAACACATATGCTTACTATCCAAACCAAAAGGAGCTGGAATATGATTAGACCACATGGAAATGCTGGACCTGAGGGATCAAATTACATTAAACTAAATCAACCACGCTGCCTTGGCTTCGTAAAGCCCCAGAGGAAGACTTTCTAGTGGTCAAGTGTCAGCTGCAGCTGTTCAGTATTGAAATGAAGTGCTTGTGAGGGCTCGGGAACATGGCGAGATCAGTTTTGCAGTGGTCAGTGGCTCCACGAGCGTGGGTTGGTGGGTACTGATCAGGGAATGTTAGAGGAAAAGGAAGTTGGCTGTCACCGAAGAAGTGACGCAGAGCAGCAGCCTAATAACACAGCTTAATACATCAGTGTTCCACAGGTAACTGTGGATCCAAAAATGTGGttataaaaagacagaaaacaaattTACACAAGGCAAGACTATAAGGCAGTGACTGGCTGGGATTTTGAGAGGGAACGTGTAGAGCCTTGGCCAGCTCTGGCCAGTGTAAGTCGGTGAGGTCACTTAAGAAACTATGTTCAGTAAAATAATTTCCACTGATACAACGCTGAAAACATTCTAAACACTGGCCTGTTTTAGAGAGGCGCTTTTATGCACTGTTGTTATAAATTCTGCATTATGATTTCAGGGTTTTCTTAccgcatttctctctctctcaagctTTTCCCCTCGAAGTGCTTCACAGATGCCCCTCTACATTCATACAAATACTTttacaaaacatataaaataattttaaatcagaatattTCACTTGTATTGGTCTCTATATACCTCTGTTTTCATGTGCCAATCTGTTTCTGAAAGCTAGACTAAATAAATATCcctaaaatttgtaaaaattctaatctcattatgtgtgtgtgcgtgtcacTTAAAAGCCCGGGTGTGTATGTTCTGACTGGATCAAATGCTGCTGATGAAACTGGGGCGGAACAGGCTAACTAAGCAATCATGAGTTGCTCCTCTTGTAACAGTAGTGACATGGAACCTGAGGAGACCTCACGAGTCCCAGGTAATATATTGGGAATAGTAAGGCAGTTGTTATGGGGGTCGCTAAAAa

Function


symbol description
zmp:0000001048 Predicted to enable estradiol 17-beta-dehydrogenase activity. Predicted to act upstream of or within estrogen biosynthetic process. Predicted to be located in cytoplasm.

NR:

description
PREDICTED: retinol dehydrogenase 8-like isoform X1

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043229938.1 True 3987 mRNA 0.41 8 9260905 9267730
Loading

Neighbor


gene id symbol gene type direction distance location
camsap3 LOC107711256,LOC107672468,LOC107587945,LOC107670479,LOC107757361 coding upstream 15248 9214244 ~ 9245657 (+)
xab2 xab2,LOC107672506,LOC107670481 coding upstream 47971 9206654 ~ 9212934 (+)
LOC122341842 LOC107588008 coding upstream 54551 9202831 ~ 9206354 (+)
stxbp2 stxbp2,LOC107711254,LOC107587946,LOC107672507,LOC107670524,LOC107757364,LOC107563326 coding upstream 61203 9189136 ~ 9199702 (+)
pbx4 pbx4,LOC103392870,LOC102788435 coding upstream 133171 9093815 ~ 9127734 (+)
col5a3a col5a3a,LOC107672483,LOC107711265,LOC107563316,LOC107757338,LOC107670510,LOC107587984 coding downstream 85968 9353698 ~ 9400810 (+)
olfm2a olfm2a,olfm2,LOC107563315,LOC107670519 coding downstream 161134 9428864 ~ 9487188 (+)
ppan ppan,LOC107672501,LOC107711268,LOC107670430,LOC107754053 coding downstream 309995 9577725 ~ 9582385 (+)
p2ry11 p2ry11,LOC107711269,LOC107672502,LOC107670465,LOC107754043 coding downstream 314644 9582374 ~ 9586218 (+)
eif3g eif3g,LOC107672439,LOC107711270,LOC107754044,LOC107670490 coding downstream 320280 9588010 ~ 9591291 (+)
G18303 NA non-coding upstream 10275 9250099 ~ 9250630 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding upstream 378783 8881198 ~ 8882122 (+)
G18092 NA non-coding upstream 585019 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 770488 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 946415 8312389 ~ 8314490 (+)
G18425 LOC105357980 non-coding downstream 145914 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 216705 9484435 ~ 9484736 (+)
G18443 NA non-coding downstream 273970 9541700 ~ 9543366 (+)
G18453 NA non-coding downstream 302308 9570038 ~ 9570283 (+)
G18454 LOC107711167 non-coding downstream 303424 9571154 ~ 9571734 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 75245 9184399 ~ 9185660 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other upstream 77615 9138467 ~ 9183290 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other upstream 248727 9010050 ~ 9012178 (+)
LOC122341292 LOC107729471,LOC107687638 other upstream 272095 8980591 ~ 8988810 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 709754 8544291 ~ 8551151 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 425219 9692949 ~ 9697915 (+)
G18491 NA other downstream 472066 9739796 ~ 9749880 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other downstream 531085 9798815 ~ 9799796 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other downstream 758088 10025818 ~ 10103461 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 1424160 10691890 ~ 10698540 (+)

Expression


zmp:0000001048(zmp:0000001048,LOC107711259,LOC107670472,LOC107563320) Expression in all Baseline Samples

Bar chart with 10 bars.
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The chart has 1 Y axis displaying values. Range: 0 to 6.
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zmp:0000001048(zmp:0000001048,LOC107711259,LOC107670472,LOC107563320) Expression in each Bioproject

Bar chart with 2 bars.
zmp:0000001048(zmp:0000001048,LOC107711259,LOC107670472,LOC107563320) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 35.
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Co-expression Network