LOC122332610


Basic Information

Item Value
gene id LOC122332610
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1035252 ~ 1045858 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229957.1
AGATTAGTTTCACTGCGAGGTCTGTGTTGTTTTGTCGGGATGCTGGTTTAACAAAAACGGCTAGAAATGTCTCTCCTGTAAATAAAGAAGTATAGTTTTTGGACCAGGACggtaaaattgtaatattttcgTCCTCGTAGTTTTGAAGCAAGCAGAAATATCTGGAGTAGTATCATCTGAACTGAGATCTGCTGCTGTGAAGATGATGTTtcttaaagaggagagtgaggaGAACATGATTGAACCAAAaacatggagaataaaacaagaagaacCAGAAACACTGAAGATAAAACACGAGGAACCAGAaacatggagaataaaacagGAGGAACAAGAAGgccTGATGAAAATCAAAGAAGAAAGACAAGATGTGCATGAAGTGGAGGAGAAATATCGGGATCAGAGAGAACGTGAGGTCGATGGAGAAACGTCAGTGAATTGCAGCATTCAAAAAACTGAGGTCAAAaggcctttcagctgctctcagtgtgggaAGTGTTTTACGCAGAAAGTGAGCCTTGAGAATCACATGTTAATTCACGCTGGAATAAAGCCTTTgagctgctctcagtgcggaagGCGTTTTAGACAGAAATCAAGTCTTGATAAtcacatgttaattcatgcTGGAAAGAAgtctttcagctgctctcagtgcggaaagagcttcACGCATAAATCAAACCATCAGAGGCACATGTTGATTCATGCTGGGAAAAAGCCTTTTTtctgctctcagtgcggaaagaCGTTTAGAGACAAATCAAACCTTAAGAACCACATGTTAATTCACGCCGGGATAAAGTCTTTCAGCTGCTCTGAGTGCGGAAAGACTTTCACTCAGAAAGGACAACTTAACAATCATCTGGTAACGCACTCTTCAGAAAAGCCTTTCCGCTGCtctcagtgcgggaagagtttcacgCAGAAATCCAACCTTCAGAGGCACATGTTACTTCACCAAGCAGTTCCTGAAGGAGTATCATCTGAGCTGAGATCTACTGAGATGGTGTTGGTCAAAGAGGAGAGTAAGGAGAACACGAGTGAACCAGAAGAGTGGAGAATCAAACAGGAGGAACCAGAAACCTGGACGATAAAACAGGAGGAACCAGAGCCCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACAAGGAGGAAAAAATCATGTGAAAGGTGACGAAATCCCCAAACGGagagatttaaagaaaaaaagagccaAAACATCTTTCACCTGCACTCGGTGTGGAAAAAGTTTCACATGGAAACACAGTCTTGAGCTTCACATGAgggttcacaccggagagaaactgTTCACTTGTGaccagtgcgggaagagcttcacaCAGTCCTCAAGCCTCAAGAAACACAAGAacattcacaccggagagaaaccgtactCCTGTAATCaatgtgggaagagtttcacacAAAAAGGACACCTTACGGCACATACaagagttcacaccggagagaaaccatacacttgtgatcagtgcgggaagagcttctcGCAGTCGGCAAACCTTAAGGATCACATGATCATTCACACTGGCGGGGATCGGCACGCGTGCGATCAGTGCGGAAAAACGTTTATGTGGGCTGCGGTCCTGAGGAAACACCTGAACATTCATAGAAAGGAGAAGCAGCATCCATGTCATCTGTGCGGAAAGAGTTTTTCATGTATAGACCATTTGAAAGCACACCAGAAGATACATGCTGGTCTGAGAGAGTACATGTGCATTGAGTGCAAAAAGACTTTTACTTTAGCTCAGCATTTGAAACGGCAccagaggatccacaccggagagaaaccttacaAGTGCTCACGCTGCGACAAGAGGTTCATCCAGTCacatcatctgaaaacacacgagatgatccacaccggagagaaaccgtacgAGTGCTCATGCTGTGACAAGAGGTTCAGACGGCCGGGAAACCTGCAAAGACATGAGAGAattcacactggagaaaaaTCCCagtTTCCCGAAGAAAGCGAGGAGAACAAAAAAATGAGTGACGCTGAGGAGAAAAAACGTGTCAGAACTGGAGAAAAACCTCGGAGCTGCTCTCAAACCAAACAGAAAGCCTAAAGAAGGCAGGAAGACTTTCACCTGCCCTCattgtggaaagagtttctTATACAAAACTAAGTTTGACGTTCACTTGAGAGTTACTGGAGAGAGACCGTTCACTTCCGATCAGTGCGGGAATGGTTTCAAACGCTTATCAAACCTCAAGGCACACATGAgcatccacaccggagagaaacaaCACGCATGCcatca

Function

GO:

id name namespace
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG:

id description
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229957.1 True 2404 mRNA 0.45 5 1035252 1045858

Neighbor

gene id symbol gene type direction distance location
LOC122332569 NA coding upstream 15900 1017707 ~ 1019352 (+)
LOC122330251 NA coding upstream 21609 1011311 ~ 1013643 (+)
LOC122330100 NA coding upstream 188807 844603 ~ 846445 (+)
LOC122332312 NA coding upstream 242584 783410 ~ 792668 (+)
LOC122330397 NA coding upstream 281539 743953 ~ 753713 (+)
LOC122330262 LOC107561206,LOC107727046,LOC107679474 coding downstream 16418 1062276 ~ 1064324 (+)
LOC122330011 NA coding downstream 33075 1078933 ~ 1084889 (+)
LOC122329984 NA coding downstream 39431 1085289 ~ 1089633 (+)
LOC122330159 NA coding downstream 44634 1090492 ~ 1102100 (+)
LOC122330518 NA coding downstream 57003 1102861 ~ 1105179 (+)
G15806 NA non-coding upstream 75158 959579 ~ 960094 (+)
G15803 NA non-coding upstream 79448 955507 ~ 955804 (+)
LOC122330733 NA non-coding upstream 144346 875247 ~ 890906 (+)
G15607 NA non-coding upstream 182573 850016 ~ 852679 (+)
LOC122330703 NA non-coding upstream 185543 847287 ~ 849709 (+)
G15833 NA non-coding downstream 23831 1069689 ~ 1070138 (+)
G15882 NA non-coding downstream 69537 1115395 ~ 1115671 (+)
G15883 NA non-coding downstream 71365 1117223 ~ 1117666 (+)
G15886 NA non-coding downstream 74782 1120640 ~ 1133792 (+)
G15889 NA non-coding downstream 75482 1121340 ~ 1123300 (+)
LOC122330135 NA other upstream 25821 1005983 ~ 1009431 (+)
LOC122330463 NA other upstream 259718 754430 ~ 775534 (+)
LOC122330407 NA other upstream 399013 625364 ~ 636239 (+)
G15563 NA other upstream 478171 553698 ~ 557081 (+)
LOC122331567 NA other upstream 725343 73544 ~ 309909 (+)
LOC122330066 NA other downstream 1154 1047012 ~ 1051151 (+)
G15939 NA other downstream 245111 1290969 ~ 1291564 (+)
G15955 NA other downstream 344881 1390739 ~ 1392850 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other downstream 349989 1395847 ~ 1408926 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 513529 1559387 ~ 1649494 (+)

Expression


Co-expression Network