LOC122332778


Basic Information

Item Value
gene id LOC122332778
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9803573 ~ 9804386 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230173.1
ATCGTCCCAACTAACAAGTAATTAGTGCTATCGCAGCATTAAAGTATCGACTGCTAACTGATCATGGTGGAGTGGACTGATGCTGAGCGCAAGGCCATCAAAGCCGTATGGGGGAAAATAAATGTGGATGTGACTGGGCCCCAGGCTTTGGCAAGATGTCTCGTCGTGTACCCTTGGACTCAACGCTACTTTGGCTCCTTCGGGTCCTTGAGTGACACCGCGTCCATTATGGGTAACAAAAAAGTGGCTGCCCACGGCAAGGTTGTGCTCAACGGACTCAGAAAAGCGGTGGAGAACATGGACGATATCAAGAATACCTACGCGGCCCTGAGCGTGTTGCACTCCGAAAAGCTTCACGTGGATCCGGACAACTTCAGGCTCCTCGGTGACTGCTTGACCATTGTCGTGGCTTCCCAGCTCGGGCGTGCCTTCAATCCGGACGTTCAGGCAGCATGGCAGAAGTTTCTGGCAGTTGTAGTCTCTGCCCTTGGAAAACAATACCATTAATTCGATagttaatgtcttgttttaaaaGCTGCACGGAATGTGCATCTTCCAAATAATGCATGAGCATCTTccaataataaaagcataaacaaTTCTGA

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13825 HBE; hemoglobin subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230173.1 True 605 mRNA 0.49 3 9803573 9804386

Neighbor

gene id symbol gene type direction distance location
LOC122331228 LOC107596828,LOC107596825,LOC107703325,LOC107587921,LOC107674643 coding upstream 7041 9795789 ~ 9796532 (+)
hbbe1.2 LOC107703325,LOC107587921,LOC107596828,LOC107596825 coding upstream 10184 9792656 ~ 9793389 (+)
hbbe1.1 LOC107587921,LOC107596825,LOC107674643,LOC107703325 coding upstream 13409 9789355 ~ 9790164 (+)
LOC122341659 si:ch211-5k11.8,hbaa1,LOC107587926 coding upstream 17450 9785282 ~ 9786123 (+)
hbaa2 si:ch211-5k11.6,hbz,LOC107587927,LOC107672462,LOC107670501 coding upstream 24283 9778492 ~ 9779290 (+)
angptl8 NA coding downstream 56077 9860463 ~ 9863218 (+)
elavl3 elavl3,LOC107754020,LOC107674672,LOC107703356,LOC106607222,LOC102780136 coding downstream 88147 9892533 ~ 9908575 (+)
nat15 nat15,naa60,LOC107690248,LOC107568044,LOC107685925,LOC107738623 coding downstream 116189 9920575 ~ 9927011 (+)
carhsp1 carhsp1,LOC107576530,LOC107733846,LOC107690249,LOC107590589,LOC107738622 coding downstream 122726 9927112 ~ 9941228 (+)
LOC122341833 tmem114,LOC107738619,LOC107685939,LOC107733824,LOC107690318,LOC107568650 coding downstream 170986 9975372 ~ 9982638 (+)
G18502 ba1,ba2 non-coding upstream 19115 9775320 ~ 9784458 (+)
G18470 dnmt1,LOC107670489 non-coding upstream 200509 9602642 ~ 9603064 (+)
G18458 LOC107672431,LOC107711167,LOC107587937 non-coding upstream 227671 9574881 ~ 9575902 (+)
G18457 NA non-coding upstream 229084 9574289 ~ 9574489 (+)
G18456 LOC107672431,LOC107587937 non-coding upstream 229311 9573184 ~ 9574262 (+)
G18507 NA non-coding downstream 50217 9854603 ~ 9859173 (+)
G18517 NA non-coding downstream 61400 9865786 ~ 9943153 (+)
G18549 prkcsh,LOC107703311,LOC107725022,LOC107754018,LOC107587972 non-coding downstream 106571 9910957 ~ 9911612 (+)
G18671 NA non-coding downstream 469588 10273974 ~ 10302050 (+)
G18744 NA non-coding downstream 767433 10571819 ~ 10579144 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 3777 9798815 ~ 9799796 (+)
G18491 NA other upstream 53693 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 105658 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 617913 9184399 ~ 9185660 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other upstream 620283 9138467 ~ 9183290 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other downstream 221432 10025818 ~ 10103461 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 887504 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 948373 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 1529355 11333741 ~ 11335825 (+)
G18949 NA other downstream 1564507 11368893 ~ 11369752 (+)

Expression


Co-expression Network