dlx4a (dlx4a,LOC107709990,LOC107689696,LOC107590410,LOC107753083,LOC107688148)


Basic Information

Item Value
gene id dlx4a
gene name dlx4a,LOC107709990,LOC107689696,LOC107590410,LOC107753083,LOC107688148
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13386428 ~ 13391506 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230480.1
TTCAGAGATGAACCCCACAGACCTCGTACACAGCCGAAAACGAAAGCAAACACACGAGCGTCGCGTTTTCACGGACATGGATCTTTCTATTGGACCTCTTTGAGCGATGGAAATCACATGACTCTCCTAAATAGATGCTGCTTTTTTTATGGTGCATCGGTCTAATGGACATAACTCTAAAAAATGACTATGACTTCACTGTCTGAAAGTTTGGTGGCTTCAGACCCCTCAAAATCGGCTTTTCTGGAGTTCAGTCACGGTTACCAGTCTCACCAGCAACATTCGCCCGGTGTGTCTCACGCGCACTATCCGGTGCACGGTTTGCATCAAGGCGCTCATTCGCAGTACGATGCGGCCTTCTCCCCGGGCGCAGCTTCGTACGGCCGTCCGCTCGCTTACCACTACCCCACAGCCCATCACCACCCTGGAGCTTACCTGCCCTATCAACACAACAACGCAGTCGGTCACTCGAGAGCGGAGGATGCAGATTCCGAGAAGCAAAGCTCCATTGAAAGCGGAGAGATACGGCTGAACGGGAAGGGGAAGAAGATCCGCAAACCCCGCACGATCTACTCGAGCCTGCAGCTGCAGGCGCTCAACCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCCGAGCGCGCGGATCTCGCGGCCAAGCTGGGCCTGACACAAACACAGGTAAAGATATGGTTCCAGAACAAACGTTCCAAGTACAAAAAGATCATGAAGCACGGCTCGAGTGGAGCAGAAGGAGAACACCTTCAAGCAGCTGCCGCAACACCGTGCTCACCAGGAATGCCACCCCTGTGGGACGTTTCCATGTCAAGCAAAGGTGCCCCCATCCACTCTGGAGGATATATGAACTCTTTTGGACACTGGTATCCTGGTCATCATCAAGACCCAATGGCCAGAACTCAGATGATGTGACGGGATGTTTAGGACAGCCTAGTGTATCTGCATACCCTCTACTGATTCAACCGATTCGCTCTGTTTCAGATCACGTCAGCCTTTTTAGCTCTGTTTACTCAAAGCCAAACTTTCTTCAAGTTCCCTTCCAGTATTTTCTTCACGAAGATTTACAATGCTGACATTTTTgcttgcaggtttttttttttttttttttgtggtggatTCTTTTCAAAGACTGAAAAAGCAACCTAACCTAAATGTGGATTTTGTAAACTCttgtaaatttgaataaaatgccaTTGTCTGACTGCCA

Function

symbol description
dlx4a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in gill and head. Human ortholog(s) of this gene implicated in orofacial cleft 15. Orthologous to human DLX4 (distal-less homeobox 4).

NR:

description
PREDICTED: homeobox protein Dlx4a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230480.1 True 1225 mRNA 0.49 3 13386428 13391506

Neighbor

gene id symbol gene type direction distance location
znf207a znf207a,LOC107590415,LOC107698690,LOC107601239,LOC107689623 coding upstream 216174 13163996 ~ 13170254 (+)
slc25a23b slc25a23b,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC107753149,LOC105898533,LOC108444036 coding upstream 224121 13154507 ~ 13162307 (+)
timm29 zgc:110046,LOC107736790,LOC107601237,LOC107698646,LOC107753167,LOC107689699,LOC107578239 coding upstream 249678 13134670 ~ 13136750 (+)
carm1 carm1,LOC107698604,LOC107689626,LOC107753277,LOC107724424 coding upstream 256820 13116031 ~ 13129608 (+)
aldh3b1 aldh3b1,LOC107698763,LOC107601228,LOC108444046,LOC108258475 coding upstream 278581 13103276 ~ 13107847 (+)
dusp3b dusp3b,LOC107753093,LOC107688089,LOC107590411,LOC107709997 coding downstream 467 13391973 ~ 13394963 (+)
cdk5r1a cdk5r1a,LOC107709992,LOC107689695,LOC107601231,LOC107688088,LOC107753032,LOC108442536 coding downstream 70546 13462052 ~ 13468151 (+)
itga3a LOC107601250,LOC107689616,LOC107688090,LOC107709989 coding downstream 82002 13473508 ~ 13501419 (+)
ca10b ca10b,LOC107753024,LOC107601251,LOC107710000,LOC107689615,LOC107590442,LOC105907875,LOC108442538 coding downstream 110098 13501604 ~ 13520389 (+)
smarce1 LOC107590406,LOC107752998,LOC107601252,LOC107709999,LOC107689614 coding downstream 129709 13521215 ~ 13528518 (+)
G19780 NA non-coding upstream 22698 13362886 ~ 13363730 (+)
G19777 NA non-coding upstream 26093 13359319 ~ 13360335 (+)
G19776 NA non-coding upstream 27383 13358501 ~ 13359045 (+)
G19775 NA non-coding upstream 28020 13357713 ~ 13358408 (+)
G19756 NA non-coding upstream 29377 13356216 ~ 13357051 (+)
LOC122341620 NA non-coding downstream 16814 13408320 ~ 13411918 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding downstream 18233 13409739 ~ 13443578 (+)
G19798 NA non-coding downstream 50180 13441686 ~ 13442149 (+)
G19890 NA non-coding downstream 396327 13787833 ~ 13792555 (+)
G19891 NA non-coding downstream 423847 13815353 ~ 13818222 (+)
si:dkey-204f11.64 LOC105898698 other upstream 271572 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 398515 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 857625 12519837 ~ 12528803 (+)
G19326 NA other upstream 872707 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 1071382 12303364 ~ 12315046 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 307031 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 604455 13995961 ~ 14002378 (+)
G19973 NA other downstream 657984 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 726961 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 728679 14120185 ~ 14123128 (+)

Expression


Co-expression Network