rdm1 (zgc:103564,LOC107585100,LOC107662434,LOC107740678)


Basic Information

Item Value
gene id rdm1
gene name zgc:103564,LOC107585100,LOC107662434,LOC107740678
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21926866 ~ 21929640 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230602.1
GGAAGTCACGGAGGCGCGCCAAGCGGGCCGATTATTGTTTTGTCTAGCTTATTAATTTAAACCATATGTTTTTTGAGGTAACCACGTCGTTGTctagctttatttaaaatccgCATCTCATGGATATTGAGGTCgatataattgattttaaagtcccTCTCGAAAACGACAAAACTATTTTCGTTTGGGACATTCAGCCAACATTTTCAGAGGCTTACATATATGAGTCCCTGTGGAGTGTGTATTCATCGTTTGGAGCTCTTTACCTGTTGAAGGTCGGCCCCAATGCCATGGTGGCAGAACCCGGGTTCTACGCCATGGTGAAGTTCTACTCATCAGCACAGGCGTCTAAAGCTCAACGGGCCACTGATAAACAGCATCTTTTCCAAAGTTCTCCTTTAAAGGTCAAATTAAGCACAAAGCAGAATATGTCCTTCTACAGCACTAGACCTCTCAGCTTTTCCAAATGTCAAAATCTGGCTAATCACTATCTGGGCTTTGGCGGCTGGTCCACTCGGATTATTACTTTGAAGGACATCTCAAGATGCGTGGACGCAGCGTGCCAAGAAGAAACAGATGACCAGAGTGTGCTTTTGAAATATGGCTGCATTGCAGAGTTGACCTTCCAACAGCATGGGATCGGCTGCCGGGGGGTCGGTGTGGCAGAAGAGATCTTTGACAACGATCAAGATCCAGAGGAAAAGCTGAGAAAAAGAGGAATGCTAATGAAACGTGACAAAGACAAAGCTGTTGTGACTGCCTTTGAAAAAGTGCTTCTCATGGTCTTGGGAAACGGGAAAGTAGCAATTGAGATCAAGTATGATCCAGATGAGATCCTTCCAGAAGAGGACTCAGAGGGAGTCATAAAAGTGAACGACCTCTCCTGGGATGAGTTTAAAGATGCTGACAGTAACACCGAGGAGGATTTCCAGTGGGACCTCACAGTGGACCTCCCCCGCTGACACTCGCCCGACTTTCTCAGCCCACGCAGTTGCCAATGTCTTCCAGATAAGTGACCACGGAAAATGagatttttctctttaatgttAGGTGTTGACCTTAATGTGTGCAGCATTACGGTCATCCTCTGTGTGTTAACCTCTCAATTTCAGCAACCGACCACAGATTCCTCTTCTCTATTTCCATAGCAATTCTCTGTTTTTTTATGTGGCTGATACTACCTTGACCACACAGGTCGAGGATTGAAGGTCAGATCAGATGCCATGTTATTTTATAAGAATCCAGAATGCATCCACCTCTAAAATCTCTTGTGTACTTAACACGATTAACCTCTTTGTTTGACATATTTGTAAGAATACATTAAGGGTTTTTGTgcattgtgtaaaataaaatatgtttgtagcgatg

Function

NR:

description
RAD52 motif-containing protein 1

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006281 DNA repair biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K10874 RDM1, RAD52B; RAD52 motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230602.1 True 1368 mRNA 0.44 7 21926866 21929640

Neighbor

gene id symbol gene type direction distance location
gh1 LOC107585059,LOC107740644,LOC107662423 coding upstream 754 21924489 ~ 21926112 (+)
scn4ab scn4ab,LOC107754300,LOC107683681,LOC107582874 coding upstream 8161 21899306 ~ 21918705 (+)
kansl1b LOC107740647,LOC107662409,LOC107754301,LOC107694965 coding upstream 83994 21797020 ~ 21842872 (+)
cdc27 cdc27,LOC107740649,LOC107754304 coding upstream 131463 21783456 ~ 21795403 (+)
LOC122341350 LOC107738996 coding upstream 476157 21447171 ~ 21450709 (+)
ifnphi3 LOC107579891,LOC107579948 coding downstream 3604 21933244 ~ 21934233 (+)
arhgap27l LOC107585057,LOC107740641,LOC107754298,LOC107683679,LOC107582875 coding downstream 21667 21951307 ~ 21974701 (+)
LOC122331845 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 coding downstream 45595 21975235 ~ 21976366 (+)
tanc2a tanc2a,tanc2,LOC107662401,LOC107711284,LOC107585082,LOC107667760 coding downstream 195250 22124890 ~ 22256992 (+)
lsm12a lsm12a,LOC107585053,LOC107740636,LOC107662400,LOC107708984,LOC107562026,LOC107582879 coding downstream 407355 22336995 ~ 22342536 (+)
G22201 NA non-coding upstream 192444 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 290296 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 290787 21635744 ~ 21636079 (+)
G22094 tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957 non-coding upstream 433368 21345129 ~ 21493498 (+)
LOC122341843 NA non-coding downstream 106242 22035882 ~ 22089931 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 581788 22511428 ~ 22672911 (+)
G22554 ddx5,LOC107695114 non-coding downstream 1010607 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 1159833 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 1171304 23100944 ~ 23148618 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other upstream 192739 21637743 ~ 21734127 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 512580 21295702 ~ 21414286 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 970292 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1731145 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1813368 20094851 ~ 20113498 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 45612 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 46869 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 339346 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 599349 22528989 ~ 22530060 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other downstream 616518 22546158 ~ 22547208 (+)

Expression


Co-expression Network