arpc1b (LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102)


Basic Information

Item Value
gene id arpc1b
gene name LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15823776 ~ 15828983 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230754.1
AGAGCATATTTGGAGAGAAAAACGACTGAGGAAATACTTTAGTTCATTCAGAGCAAAGCCAGCGTTTGTGTTGACTGCTCAGAGTCCACGAACTCAGGCTTCTGTTGCAGACTTTGTCAATCCCCCCCACATCTCAGTTTTTTACGGTTTCCTGGGAAAAAGCAGCTATGTCTTATCACAGTTTTCTTCTTGAACCTATCAGCTGCCATGCCTGGAACAAGGACCGAACTCAAATTGCACTGTGTCCTAATAACCACGAAGTCCATATCTACAAGAAGGATGGAAGCAACTGGAACAAAATCCATGTGCTGAAGGAGCACAACGGCCAGGTTACTGGCATTGACTGGGCCCCAGAGAGCAATCGTATTGTGACCTGTGGCACTGACCGTAACGCCTATGTCTGGACCCTAAAGGGAGATGCATGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGTGCTGCTCGCTGTGTGAAATGGTCTCCTAAAGAAAACAAGTTTGCAGTGGGCAGTGGCTCACGGCTGATCTCAGTCTGCTATTTTGAGCAGGATAATGACTGGTGGGTGTGCAAGCACATTAAGAAGCCCATCCGCTCCACCATTCTTTGTTTGGACTGGCACCCCAATAACATCCTTTTGGCAGCTGGAtcgtgtgactttaaatgcagGATCTTTTCCGCTTACATAAAGGAAGTAGAAGAGAAGCCTGCTCCAACAGCGTGGGGCTCGAAAATGCCCTTTGGAGAGATCATGTTTGAATCTACTGGAACTTCAGGTTGGGTACACGGTGTTTGTTTTTCGGACAGCGGGAATCGTGTGGCCTGGGCCAGCCATGACAGCACCGTGGCAGTGGCTGAGGGAGGAAAGACTGCTGTCTGCGCCAGTCTGACTTCAGAAACCTTGCCTCTTCTGTGTGTGACTTTCATTACTGAGAACAGCCTAGTTGCAGCTGGCCATGACTGCTACCCCGTGTTGTTTGTCTATGATTCGAACAAAGCAGCCTTGTCTTTTGGAGGGAAACTCGATGTGCCCAAACAGAGTGCTCAGAAGGGCATGACAGCCAGAGAACGCTTCCAGAACCTGGATAAGAAAGCCACTGCTGACAGCAAAGAAGCCGTTCTGGAGTCTGTGCACAAGAACAGCATCAGCCAAATTTCAGTTCTTAATGGAGGAAAAGCACAGTGTGCCAAATTCTGCACCACTGGTATGGATGGAGGCATGGCTATTTGGGATGTAAAGACCCTTGAATCTGCAATGAAGGACCTCAAGATTGTCTAGACATAGCAGACACCGGAACAAAACGTCTGCAATTCATATCGCTTgccttttcatcatttttttaaatgcagttgtctataatttttttcaagattATGTTTAGATTAACAGTTTTAGTAGTTTAAGGATTTTATACTGATGAAATTTAGCAAACCTGTTCTGGATGAACCAATAACTGAATTTTGTCAGAATTTATATGCTGGTCATAAATTGCTTTTCTTTAAGTAGTGCAGGTGCCATTGCATTGGatttttaataaactgcaactgaatctaataaaataaacatgattgcTTA

Function

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1B

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230754.1 True 1574 mRNA 0.45 10 15823776 15828983

Neighbor

gene id symbol gene type direction distance location
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 341 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 126402 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 205712 15608385 ~ 15618064 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding upstream 225064 15595214 ~ 15598712 (+)
bud31 bud31,LOC107737741,LOC107720055 coding upstream 228703 15593873 ~ 15595073 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding downstream 6100 15835083 ~ 15846966 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 321870 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 383384 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 393217 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 464239 16293222 ~ 16301224 (+)
LOC122334397 NA non-coding upstream 95906 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding upstream 102473 15720247 ~ 15721303 (+)
G20415 NA non-coding upstream 234967 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 684876 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 830739 14990229 ~ 14993037 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 33030 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 43819 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 45050 15874033 ~ 15875959 (+)
G20468 NA non-coding downstream 49206 15878189 ~ 15878426 (+)
G20469 NA non-coding downstream 50147 15879130 ~ 15879329 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 79582 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 543663 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 638903 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 654518 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1152208 14664919 ~ 14671568 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 350637 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 861720 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 941562 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1284065 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1308947 17137930 ~ 17200630 (+)

Expression


Co-expression Network