mmd2a (mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066)


Basic Information

Item Value
gene id mmd2a
gene name mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15835083 ~ 15846966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230767.1
CATCAGTTACTACAAAAAGCGCTTACTACATTCATAGATTTGTTCCAATTTGTCCACTGATGACAAGGAGAAGAACTTGTACCCGGACTTGGTACCAACAGCTAGGGATCTGGAAAGCAAAGGCAAGGaggttTATGAACAACCGAGTCCCATCTAGCAAGAGATACCAGCCAACCGAGTATGAGCATGCAGCCAACTGTGCCACTCATGGATTCTGGATCATTCCCAGTATCCTGGGCAGCTCAGTGTTGTACTTCCTCTCTGATGACCAGTgggagaccatctctgcatggATGTATGGGACAGGTCTCTCTGGGCTGTTCATCATGTCCACCATGTTCCATACGGTGTCCTGGAAGAAAAGTCATCTcagGAAGGTGGAGCAGCGATTCCATATGTGCGACAGGATGGtgatatatttctttattgctGCATCTTATGCACCCTGGCTGAACCTGAGGGAGCTAGGACCCTGGGCTGTGCACATGCGCTGGTTGGTGTGGATCATGGCTTGCGCTGGCTCTGCCTATGTCTTCTTCTTTCATGAAAAGAACAAGATCCTAGACTTACTGTGCTACACTGCCATGGGAGCTGTTCCTGCAGTTGTTCTTCTGTCAATGCCTAACAGAGAGGGCATATTAGAGCTGTCAGTGGGCGGAGTCTTCTACTGCCTGGGAATTGTCTTCTTCAAGAGCGACGGCCTCATCCCATTCGCTCATGCCATCTGGCACGTCTTTGTGGCCGTGGGGGCAGGAATACACTATTACGCCATCTGGAGGTACTTGTATGCAACGGGGACCGGCCAAATCAAAATATCCAGGTGACAGACGGAGATCTCAAGCGTGTTCACACATACAGGGTTTGTCGAGCTATAAAGACAATGTATTTGATCATGAGTTGCCTTTGCATCCCTCTATATTAATCATAGACGGGTATGCTTTAGTACTGTTggccta
>XM_043230776.1
TTTGGACACTCTGAAGCGAGTCCGCCCGTCGCTTTCGCTGGGAGCAGACGGTCCGTCCACCCGGGAGCCAGCTCCGCAGCGAACATGTACAAATATGTACGGTATGGATTTTAGGAGGACGAAGCTCGGCAGgttTATGAACAACCGAGTCCCATCTAGCAAGAGATACCAGCCAACCGAGTATGAGCATGCAGCCAACTGTGCCACTCATGGATTCTGGATCATTCCCAGTATCCTGGGCAGCTCAGTGTTGTACTTCCTCTCTGATGACCAGTgggagaccatctctgcatggATGTATGGGACAGGTCTCTCTGGGCTGTTCATCATGTCCACCATGTTCCATACGGTGTCCTGGAAGAAAAGTCATCTcagGAAGGTGGAGCAGCGATTCCATATGTGCGACAGGATGGtgatatatttctttattgctGCATCTTATGCACCCTGGCTGAACCTGAGGGAGCTAGGACCCTGGGCTGTGCACATGCGCTGGTTGGTGTGGATCATGGCTTGCGCTGGCTCTGCCTATGTCTTCTTCTTTCATGAAAAGAACAAGATCCTAGACTTACTGTGCTACACTGCCATGGGAGCTGTTCCTGCAGTTGTTCTTCTGTCAATGCCTAACAGAGAGGGCATATTAGAGCTGTCAGTGGGCGGAGTCTTCTACTGCCTGGGAATTGTCTTCTTCAAGAGCGACGGCCTCATCCCATTCGCTCATGCCATCTGGCACGTCTTTGTGGCCGTGGGGGCAGGAATACACTATTACGCCATCTGGAGGTACTTGTATGCAACGGGGACCGGCCAAATCAAAATATCCAGGTGACAGACGGAGATCTCAAGCGTGTTCACACATACAGGGTTTGTCGAGCTATAAAGACAATGTATTTGATCATGAGTTGCCTTTGCATCCCTCTATATTAATCATAGACGGGTATGCTTTAGTACTGTTggccta
>XM_043230786.1
aaatgcgctGAGAGCATGTCGGAAACGTTGAGATGTGATACCCGACCACTGTAATTATATCTTCCAGTCATGAAAATAACGaccaattttaaaacaaacaacaaaaaaagtttgttaatgACAGGATTTAACCGAACACCCCCAGATGCGCGTAAGGCTACGTAGGAAAACATGAGGGTTTTGCTGAACGGCGTGCGTGTAACGGATCTCAGCTTGTTTGCGTCTTTCTAAACAAACATAGCTAAAGCAAACATCCGACGGGCAACGGACCAACGTGATGCAGTTCGTCGGGAGCGAGCCTTTCCCAAGTTCACTTTGAAGGTAGCGAAGGGGCGGAGAGGGGATCGAGCGCAGCTGCATTCCTGACCGGGAGAGAGCGGCTCGCTTTACGGTTATCACAGAAACCCGCTGTCAgtctctcagctcctctcgGACGCGCCGGTCTTCACGCGCTGCTTCAGGCGCCGCCGCTTCCTCCCAAGTTTTGGACACTCTGAAGCGAGTCCGCCCGTCGCTTTCGCTGGGAGCAGACGGTCCGTCCACCCGGGAGCCAGCTCCGCAGCGAACATGTACAAATATGTACGGTATGGATTTTAGGAGGACGAAGCTCGGCAGAAGAACCGGCCTTCATGAAGCTGGAGCGTATGAAAGGATAATGAACAAGGTTTTATCAAAAGACGACGTAGCCTAAGCCACTTTATCACGACTTCCGTTTGATTACTTGCATgttTATGAACAACCGAGTCCCATCTAGCAAGAGATACCAGCCAACCGAGTATGAGCATGCAGCCAACTGTGCCACTCATGGATTCTGGATCATTCCCAGTATCCTGGGCAGCTCAGTGTTGTACTTCCTCTCTGATGACCAGTgggagaccatctctgcatggATGTATGGGACAGGTCTCTCTGGGCTGTTCATCATGTCCACCATGTTCCATACGGTGTCCTGGAAGAAAAGTCATCTcagGAAGGTGGAGCAGCGATTCCATATGTGCGACAGGATGGtgatatatttctttattgctGCATCTTATGCACCCTGGCTGAACCTGAGGGAGCTAGGACCCTGGGCTGTGCACATGCGCTGGTTGGTGTGGATCATGGCTTGCGCTGGCTCTGCCTATGTCTTCTTCTTTCATGAAAAGAACAAGATCCTAGACTTACTGTGCTACACTGCCATGGGAGCTGTTCCTGCAGTTGTTCTTCTGTCAATGCCTAACAGAGAGGGCATATTAGAGCTGTCAGTGGGCGGAGTCTTCTACTGCCTGGGAATTGTCTTCTTCAAGAGCGACGGCCTCATCCCATTCGCTCATGCCATCTGGCACGTCTTTGTGGCCGTGGGGGCAGGAATACACTATTACGCCATCTGGAGGTACTTGTATGCAACGGGGACCGGCCAAATCAAAATATCCAGGTGACAGACGGAGATCTCAAGCGTGTTCACACATACAGGGTTTGTCGAGCTATAAAGACAATGTATTTGATCATGAGTTGCCTTTGCATCCCTCTATATTAATCATAGACGGGTATGCTTTAGTACTGTTggccta

Function

symbol description
mmd2a Acts upstream of or within heart morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including nervous system; notochord; pectoral fin; vasculature; and ventral mesoderm. Orthologous to human MMD2 (monocyte to macrophage differentiation associated 2).
mmd2 Enables protein kinase activity. Involved in several processes, including positive regulation of Ras protein signal transduction; positive regulation of neuron differentiation; and positive regulation of protein kinase activity. Located in perinuclear region of cytoplasm.

NR:

description
PREDICTED: monocyte to macrophage differentiation factor 2

GO:

id name namespace
GO:0019835 cytolysis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230767.1 False 956 mRNA 0.49 7 15835083 15846966
XM_043230776.1 False 958 mRNA 0.51 7 15837909 15846966
XM_043230786.1 True 1553 mRNA 0.50 8 15837426 15846966

Neighbor

gene id symbol gene type direction distance location
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 6100 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 11648 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 137709 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 217019 15608385 ~ 15618064 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding upstream 236371 15595214 ~ 15598712 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 303887 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 365401 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 375234 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 446256 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 512946 16359912 ~ 16369501 (+)
LOC122334397 NA non-coding upstream 107213 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding upstream 113780 15720247 ~ 15721303 (+)
G20415 NA non-coding upstream 246274 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 696183 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 842046 14990229 ~ 14993037 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 15047 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 25836 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 27067 15874033 ~ 15875959 (+)
G20468 NA non-coding downstream 31223 15878189 ~ 15878426 (+)
G20469 NA non-coding downstream 32164 15879130 ~ 15879329 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 90889 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 554970 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 650210 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 665825 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1163515 14664919 ~ 14671568 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 332654 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 843737 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 923579 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1266082 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1290964 17137930 ~ 17200630 (+)

Expression


Co-expression Network