LOC122333258 (LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680)


Basic Information

Item Value
gene id LOC122333258
gene name LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1925747 ~ 1941793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230813.1
ATGTTTAGAGACTGCTCCCAGTTCAAATGTCAGTCCACCCACTTCTAATAAAGCTGATGAGAAGTTTCAGTTCAGCATCACTGCATTCAGCTGCTGAAGAGAGAGACCGAATCTGCAGCATCTCAGCTCAGCGTAATACAGCGAGAGACTGAAGAGACTGTGTGCAGGATGAGGTTTCTGATCTCTGTGTCGCTGCTGCTGTTGATTCGTGGTCCTACAGCCTCCAGCTCTGATCCCTGCAGTAACTACACCACTCTGGATGAATACTGGAGAGACATGCAGACGAACTACTACATGCCTTCGAGTAACGACGCTCTTGTTGAATGGAGGGGCTGGTATCGGCTGTATCTGAGAGGACTCAGCGCTCAGGTGTCCGAGTGGTGTGTGAGTAACACTCAGTGCACCGGTGAAACCGGACTGTTTCTCAATGGTTCTCATCCCGGACCGGCCGATGGAGTGGTGACCCGTGAAGTGCTGGGAACCTGGCAGGGCTCGTCTTCCTCTTGTGGCAGCTACAAATCCAACTCCATTCGAGTCAAAGCTTGTCCCGGAGATTACTACGTCTATGAACTTGTCAAACCCAACGCATCGATCCCTAGGCCTGTGTACTGCGCAGTTGCTTTCCAAACCATCAGCAGTGATCCCTGCTACAACTACAAGTCTCTAGATCGTCCCTGGAGAGCCAACAATGAAAGTGGAGATTACATTTGTGATCTTTATTTCTCCTGGAACGGCTGGTACCGGCTTTTCTACCATGGAATGGACATCCAGCTGTCAGAGACCTGTGTTAGCTCATACAGATGTAACTCTCAGATTACTCTGTGGCTCAACGGTTCTCATCCTCGTATTCAGGATGGAGTGGTGGTCAGACAGGTCTGTGGGACTTCTGGAAGTCAATGCTGTGATTACAAAACAGGACCAATCAGAGTTAAAGCATGTCCAGGAAATTACTATGTCTATGAACTTGTGAGGCCAAACAGTTGGTGTGCGGGATACTGTACAaATATTAGCACCATTTCTCAGCCAATTTCCACTGTAAGTCCAGCTATAACCACTAGAATTGACAACTCTCTGAATTTTGACCCATGCATGAATTACAGCAGGCTCAATGACTACTGGAGAAACGTCAGGGATGGATATGGATACAATTACGATGACACAGATGTAAACTGGGATGGCTGGTATCGACTCTTTATTAATGGACTCAGTGCGCAGATGAATGAATGGTGTGTGTCTTATGCGACATGTGGAGGTTATAGTGCTCTGTGGCTTGCTGGATCTCATCCTCGAGTAGAAGATGGAGTTGTTACTCGTGACGTTTATGGCTCTCGTAATGAGAAGTGCAGTTATTACAGATCCAGCCCAATCCAAGTCAAAGCTTGTCCTGGGAACTATTTTGTATACAAACTTACCAGACCTTCTCTTTCAATCCCAGCTCCTACATATTGTGCAGTTGCTTTCCAAAGCATCAGCAGTGATCCCTGCTACAACTACAAGTCTCTGGATCGTCCCTGGAGAGCCAACAATGAAAGTGGAGATAacatttgtgatatttatttctCCTGGAACGGCTGGTACCGGCTTTTCTACTATGGAATGGACATCCAGCTGTCAGAGACCTGTGTTAGCTCATACAGATGTAACTCTCAGATGAGCCTGTGGCTCAACGGTTCTCATCCTCGGATTCAGGATGGAGTGGTGGTCAGAGAGATCTGTGGGAATTATGGGAGTCAGTGCTGCGAATACAAAACAGGACCAATCAGAGTTAAAGCATGTCCAGGAAATTACTATGTCTATGAACTTGTGAGGCCAAACAATTGGTGTGCGGGATACTGTACAAATATTAGCACCATTTCGCAGCCAATTTCCACTGTAAGTCCAGCTATAACCACTAGAATCAACAACACTCTGAATTTTGACCCATGCATGAATTACACCACACTCAATGACTACTGGAGAAACATCAGGTATCGATATGGATACAGTTACGATGACACAGATGTAAACTGGGATGGCTGGTATCGACTCTTTATTAATGGACTCAGTGCGCAGATGCCTGAATGGTGTGTATCTTACTCAACATGTGGAGGTTATAGTGCTCTGTGGCTTGCTGGATCTCATCCTCGACTAGAAGATGGAGTTGTTACTCGTGACGTTAACGGCTCTCATAATGAGCAGTGCAGTTATTACAGATCCAGCCCAATCCAAGTCAAAGCTTGTCCTGGGAACTATTTTGTATACAAACTTACCAGACCTTCTCTTTCAATCCCAGCTCCTACATATTGTGCAGTTTCAGTGAACAtggctttatttacGTTTCACCCCCCAAGTGTTGACCCATGCTACAACTATAACAGTCTGAATGAGGCTTGGAGAGCAACAAACAATTCTTACAGTGGTAACAATCTTAAGTGTGACAGCTTCCAGGAGGGCTGGTACAGGCTGTTCTACAATGATCAGAGTGCCCAGATGCCAGAATCATGCGTTAATCAATACATGTGTGGCACTTACATGTCAATGTGGCTCAACGGCTCTCATCCGCGGCTGGAAGATGGAGTGGTGACCCGTCAGGTCTGTGGCTCCGGATGGACTGGCTGCTGTACTTACAGATCTCTCCCTATACAAGTCAAAGCCTGTCCAGGAAATTACTATGTTTATGAGTTTGTCAACCCAATATTCTGTGGAGCTTACTGCACAGATGTCACAAGGCTTAATGCAGCCTcttcaacaacaacatcaacacCAGCAACAACAGCATTCATTACTCCAACCACTAGTGAAATGGATCACTGTTCTGAACTCAGCTGCTCTGAGGATGAacactgtgggaaaaaaaatggtgtttatGGCTGTTTGTGTAACACGAACCATTACGGACAGCAATCTGAATTTTTTGATTCCTCAGAAACCTGTGAAAGCAGCTCTGGCTCCATGTCTGTGTCTCGCTGTCAGCTCTTTGAGGCTGGTTATTCGGCTGATATCTTACATCTCAATGATCCCAGCTGCAGAGGAACAGTGAGGAATGGCAGAGTGGAATTTCATTTTGACAACGACGAGCACATCTGTGGAACAAACCTTGTGGCCAATGGCACCCACTTCATCTATGATAACTTCATTTTGGGAACACCGAGGTCAGAAGGCCTCATCAGCAGAGTGAAGGTTTTGAAGCTTTCTTTCAGCTGTGCTTAtcctcaaacacaaacactttccATGAATGTGGAAATCAACCCACTAGAGAGCATTGTGCACAAGAGCCTTCCAGCGGGTGAAGGCACGTATCGGGTTCGGATGATTCCATTTCAGGATGATAAGTTTACCCGGCCCTTCACTGGTGGTGTAGATGCAGAGCTCAACCAGGAGATGCACGTGGAAGTTCGTGCCGAGGGGGTTGACAGCCGGCAGTTTGCTCTGGTGATAGACACTTGCTGGGCTACACCGGTGAATGATCCTGATTACAGTCTCCGTTGGGATCTCATCGTCACAGAGTGTCCCAATCCAAATGACGACACGGTGGAGCTGCTCCAGAGCAGCGTCTCAACCTCCAGCCGTTTCTCCTTCAAGATGTTCATCTTCACTGCAAACTCCACTAAGCTTTACCTGCACTGTGCTGTTCACCTTTGCCTTCTGTCAAGCAATCACTGCTCAGTGAACTGTAGCTCTGGGCAGCACTGGAGAAAGCGCAGGTCTCTGGACTTTCATGACAGTTCTTCCATATCCATGGGTCCTTTAATGTTGTCAGAAGGAAACACagATACGTGGGTCAAAGACAAAGTGAAGGTCTCTAAGGCTTCTTCTCTGAGTGCTTCTCTGATGGTGTTGTTTGTCTTTATGATGAGTGTCttgattcttttttaaaacatctttgaataa

Function

NR:

description
PREDICTED: alpha-tectorin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230813.1 True 3870 mRNA 0.46 21 1925747 1941793

Neighbor

gene id symbol gene type direction distance location
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding upstream 55137 1867624 ~ 1870610 (+)
LOC122332958 NA coding upstream 195750 1728370 ~ 1729997 (+)
LOC122329718 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 198054 1711295 ~ 1727693 (+)
LOC122330144 tob2,LOC107572283,LOC107691089,LOC107745517,LOC107734722,LOC107672913,LOC107563731 coding upstream 225084 1693056 ~ 1700663 (+)
LOC122330255 pmm1,LOC107672914,LOC107691086,LOC100007686 coding upstream 238770 1680314 ~ 1686977 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding downstream 60886 2002679 ~ 2010431 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding downstream 189425 2131218 ~ 2140821 (+)
LOC122341668 LOC107755616,LOC107672923 coding downstream 319817 2261610 ~ 2267508 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding downstream 325795 2267588 ~ 2270464 (+)
LOC122333376 NA coding downstream 351510 2293303 ~ 2296045 (+)
G16017 NA non-coding upstream 34720 1871280 ~ 1891027 (+)
G16033 NA non-coding upstream 70063 1854895 ~ 1855684 (+)
LOC122330751 NA non-coding upstream 99430 1824790 ~ 1826317 (+)
G16008 NA non-coding upstream 221071 1689042 ~ 1704676 (+)
G16004 NA non-coding upstream 310218 1615160 ~ 1615529 (+)
LOC122330717 NA non-coding downstream 896 1942689 ~ 1943729 (+)
G16233 NA non-coding downstream 86601 2028394 ~ 2030843 (+)
G16243 LOC107755616,LOC107672923 non-coding downstream 101858 2043651 ~ 2046384 (+)
G16226 NA non-coding downstream 108392 2050185 ~ 2056000 (+)
G16219 myh9,LOC107745511,LOC107672897,LOC107691111 non-coding downstream 121772 2063565 ~ 2069715 (+)
trnar-ccu_2 NA other upstream 59962 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 60518 1619312 ~ 1865229 (+)
trnar-ccu_1 NA other upstream 275019 1650656 ~ 1650728 (+)
G16003 pick1,LOC107734822,LOC106607154 other upstream 276253 1559387 ~ 1649494 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other downstream 82555 2024348 ~ 2320138 (+)
G16223 txn2,LOC107745512 other downstream 170244 2112037 ~ 2114339 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other downstream 218553 2160346 ~ 2165693 (+)
G16347 NA other downstream 626291 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 699353 2641146 ~ 2646756 (+)

Expression


Co-expression Network