LOC122333296


Basic Information

Item Value
gene id LOC122333296
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11984546 ~ 11986105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230846.1
CTGACAACTCGTCATACTGCTCACGTAAAATGGGATGGACTGAGGCATCCCTTAAATGGCTTTCTTTCGTTTCGCTTTTCCAGACTCTGTCTGGGTGTTTGCAAACTAAACCAAAATGAATCAACAAATCTCAGAATTTAGGATTGTCCTAGTTGGCAAAACAGGAGTGGGTAAAAGTGCCACCGGTAACACCATCCTTGGAAGAAATCATTTTCACAAAGAAGCGAGCTCTAAATCTGTGACTAAGCAGTGCAGTCTGGCCACCACTATTATTGATGGCAAAGCAATCAAAGTTGTGGACACTCCAGGCTGGTGTGACACACAGCTCTCTGAGGCTGAGCTCACAAAAGAGACGGTGAAATGCATTGACATGTCATACCCTGGACCGcatgtctttctttttgttctggCAATCGGCCGCTTCACAGCTGAAGAGAAGAAAACTGTCCAGAAGATACAGGAGATCTTTGGGGAAGGAGCTACAAGATACACAATGATTTTGTTCACAAGAGGAGATGACCTGGAGGAAACAAGCATTGACAGCTATCTGAAAGAAGCTATAAAAGATCTACAAGACTTGGTTTCCAAGTGCAATGGCAGATACCACGTTTTCAATAACAGAGATAAAAGCTATAACCAAGTCACTGTGCTCCTGCAAAAGGTCCAAGACATGGTAAAAGAAAATGGTGGTGAATgctacacaaacacaacataCCAGCTGCTGGACACATACAAGAAAAGAGAGGTTGAGTTACAAAAAGAAGCTGAAGCCACTAGAAAGGAGATGCAAACCAGAGAAGCTGAGCTCCAAAGACGAATAAATCTCATGGAACAGGAACAGCAGCGTCAAAAGTTGAGAGAAGCACGGCTGGTGCAACAACTgagaaaaaatgaaattgaaagtGTTATAGGAGGTGCTGTTATGGTTTCTTTGCTGGAGCAAATGCAAATTGAAGAAAATGAAAGGAGACAACAAGACaaacaagagaaagaaacagcatTAAGTGCCCTGGCTACAGAACATCGACTGAAAATGAGTGCTGAGAGACAACAGCAGAGAGCAGATAAGTTTCGGTATCAGCGTCGCATACAAGAAGAGGAGTTGAGAAGACGAAATGAAGAGCGTGAAAATATACGAAGAATGGAGAGTGAGAAACAGAGGTTCTCACAGGAGAAGcaagatattttaagaaagtACAAAGCAAGAATACATATGCTGGAAGAACAGAACCGGAAAGCAGAAGCTGACAAAGAAGAAATGTTAAagaattctttcaaaaagaCCAGttgcattatttcataaatagcTACTTAGACTAAATTTAGTTTTCTGGTGTAACGCTCTTTGATGTGAAGATAAGTGTAAATATAACAGgttttctaaatgtaataaattattgaacatctggtttaattgtttaattttattgtaaatgtataattaaacagTTCAGACATC

Function

GO: NA

KEGG:

id description
ko03060 Protein export
ko03070 Bacterial secretion system
ko02024 Quorum sensing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230846.1 True 1459 mRNA 0.40 2 11984546 11986105

Neighbor

gene id symbol gene type direction distance location
LOC122329533 NA coding upstream 2546 11979763 ~ 11982000 (+)
prl LOC107730739,LOC107554085,LOC107689711,LOC107658486 coding upstream 5488 11976888 ~ 11979058 (+)
LOC122336110 LOC107583028,LOC107658478,LOC107583029,LOC107729487,LOC107729488,LOC107658480 coding upstream 99547 11878905 ~ 11884999 (+)
LOC122336136 LOC107693507,LOC107729487,LOC107548335,LOC107730746,LOC107730763,LOC107693508,LOC107583028 coding upstream 117068 11866054 ~ 11867478 (+)
LOC122336094 LOC107583028,LOC107658478,LOC107729487,LOC107693507,LOC107583029,LOC107658480,LOC107548335,LOC107730746 coding upstream 121617 11861776 ~ 11862929 (+)
ap2a1 ap2a1,LOC107730730,LOC107554102,LOC107729492,LOC107658487,LOC107583017 coding downstream 8990 11995095 ~ 12013540 (+)
si:ch211-195b15.8 LOC107658488,LOC107729553,LOC107689670,LOC107554105,LOC107730733,LOC107583083 coding downstream 28900 12015005 ~ 12018012 (+)
rras rras,LOC107583016,LOC107729461,LOC107658490,LOC107730736,LOC107554112,LOC107689668 coding downstream 33069 12019174 ~ 12023434 (+)
prrg2 LOC107730734,LOC107583014,LOC107554111,LOC107729459 coding downstream 38082 12024187 ~ 12026934 (+)
LOC122342085 LOC107729420,LOC107730741,LOC107554113,LOC107689667 coding downstream 74026 12060131 ~ 12061530 (+)
G19208 NA non-coding upstream 10540 11967648 ~ 11974006 (+)
LOC122338225 NA non-coding upstream 149293 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 264967 11712609 ~ 11719579 (+)
G19126 NA non-coding upstream 543208 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 547349 11436944 ~ 11437197 (+)
G19255 NA non-coding downstream 86614 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 88126 12074231 ~ 12074503 (+)
G19263 NA non-coding downstream 132433 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 146524 12132629 ~ 12134957 (+)
G19287 NA non-coding downstream 241830 12227935 ~ 12228520 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 90890 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 150622 11773200 ~ 11833924 (+)
G18949 NA other upstream 614794 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 648721 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 1142039 10752759 ~ 10842507 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 41044 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 106498 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 127943 12114048 ~ 12117939 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 246322 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 317259 12303364 ~ 12315046 (+)

Expression


Co-expression Network