napsa (zgc:63831,LOC107695135,LOC107748792,LOC107583260,LOC107672139,LOC107723590)


Basic Information

Item Value
gene id napsa
gene name zgc:63831,LOC107695135,LOC107748792,LOC107583260,LOC107672139,LOC107723590
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23655511 ~ 23661345 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230902.1
CCCCGAAAGCCGCTTTGGCTGTAAGAGTTGCGCGCGAGGGGCGACGGTGCGggttatatctcacaattgcgTCTGCGAGTTTTGATTCAcaccagaaataaaaaaaaaacggttttgttttaaagagcgTAAAATGAACCGCTTTCACCCGTTTGCGATTTTAATCTGGCTGCTAATCGCGGACAGTCAAGCAATAATCAGGATCCCTCTGCACAAGATGCGCACCGTGCGCCGCATGCTGGCGGAGAATGGAAGAACAATCGACGAGATCAAATCCATGGCCAGAGATCAGGCCTCCAAAGTCAATTCTTCACCGCAGGCCACAACTACACGCTCACCATCGCCAACAAAACTGCCACCGCCTATTGAGAAACTCACCAACTTCATGGATGCTCAGTACTTCGGGGTGATCAGCATCGGCACCCCTCCTCAGGACTTCACTGTGCTGTTCGACACCGGGTCGTCCAACCTCTGGGTTCCCTCTGTCCATTGCTCCTACCTGGACATCGCGTGCTGGTTGCACCGTCGCTACAACTCTAAGAAGTCCAGCACGTATGTTAAGAACGGCACGCAGTTCTCCATCCGCTACGGCAGAGGGAGTCTCACCGGCTTCATCAGTCAGGATACGGTCACTCTGGCAGGGCTGAAGGTGCCAAACCAGCAGTTTGCAGAGGCGGTCAAACAGCCTGGGATTGTGTTTGCGGTGGCACGTTTCGATGGCATCCTGGGCATGGCGTACCCTGCCATTTCTGTAGATGGGGTTACGCCGGTGTTTGACACGGCCATGGCTGCCAAGATCCTGCCTCAGAATATCTTCTCTTTTTATATCAACCGGGACCCCGCAGGTGAAGTGGGAGGTGAGCTGATGCTGGGAGGCTTTGACCAGCAGTATTTTGATGGCGATCTGCATTACGTCAACGTCACACGGAAAGCCTACTGGCAGATAAAGATGGATAAAGTTCAGGTGGGCGGCACTCTTACCCTCTGCAACAGTGGATGCCAGGCAGTTGTGGACACGGGAACGTCAATGATCACGGGGCCGGTTCAAGAGGTGCGGGCGCTGCAGAAAGCCATCGGAGCCATACCCCTGCTGATGGGAGAGTACTGGATTGACTGCAAGAGGATTCCATCACTTCCTGTTGTTTCTCTCAGCCTGGGAGGGAAGAAGTTCAACCTAACTGGGGAGGACTACGTTTTGAAGATGAGTCACATGGGTGtcagtgtctgtctgtctggctTCATGGCAATGGATATCCCCCCCCCTGCCGGGCCGCTGTGGATTCTGGGAGACGTGTTCATCGGTCGCTACTACACTGTGTTTGACAGGGAGACAGACCGCGTGGGCTTTGCTCCTGCTAAATGAAAAGACTGATAAACAATCACATCGTTGTATTGTACTGGAGAGAATGGGCCATTATCAGTACAGTACTGGTCTATTGCAGTTTGAAATATGGCTGAGCGACAGGACTGGCTCTTTCAGGTATGAAACTCCAAAAGAAGAAGCGAGACAAATTTGTTGAGCTACGATTATCTGTACTTCCCGCTTGAAGCcttgctctttttatttttcactgtttgaatagatgaataaaaataaaaaaaagcatttttagtttattattaagctattaaatattttgtagaaaatTTACTAAAGATTGAATGACTTGGTAGATGAATAGTTCTTTAGATTTGCGTCTCTGAATTGTATTTCTGTTAAAGCTGATCAAGACTACTCGGTTTCTTTATTGTCTAATCATTTAACTCGCTGCAGTTCTTCCGAATCTGAAGTTAAATAAAGCTTTGTTTGTA

Function

NR:

description
PREDICTED: cathepsin D-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230902.1 True 1812 mRNA 0.49 9 23655511 23661345

Neighbor

gene id symbol gene type direction distance location
st13 st13,LOC107695132,LOC107672142,LOC107602335,LOC107583261 coding upstream 10971 23636361 ~ 23644540 (+)
cbx7a LOC107695130,LOC107748788,LOC107583303,LOC107602332,LOC107672137,LOC107723608 coding upstream 67883 23582431 ~ 23587628 (+)
mrtfaa LOC107695127,LOC107723606,LOC107602328 coding upstream 175220 23444986 ~ 23480291 (+)
slc25a17 slc25a17,LOC107748783,LOC107672147,LOC107709637,LOC107695117,LOC107602302 coding upstream 211437 23438398 ~ 23444074 (+)
sp100.4 LOC107748809,LOC107583267 coding upstream 234537 23415427 ~ 23420974 (+)
si:ch211-256m1.8 si:ch211-256m1.8,LOC107748794,LOC107695133,LOC107583259,LOC107723616,LOC107672154,LOC107602338 coding downstream 12687 23674032 ~ 23681012 (+)
mpst mpst,zgc:162544 coding downstream 21140 23682485 ~ 23684711 (+)
LOC122341829 LOC107672151,LOC107583318,LOC105890774,LOC103393291,LOC107695138,LOC103147375,LOC105029658,LOC107748796,LOC102224681 coding downstream 23508 23684853 ~ 23687289 (+)
il2rb il2rb,LOC107583317,LOC107695139 coding downstream 34848 23696193 ~ 23705438 (+)
trnas-aga_1 NA coding downstream 174754 23836099 ~ 23836180 (+)
G22758 NA non-coding upstream 9345 23578476 ~ 23646166 (+)
G22757 NA non-coding upstream 77270 23574898 ~ 23578241 (+)
G22754 NA non-coding upstream 92265 23563040 ~ 23563246 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding upstream 240602 23412813 ~ 23414909 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding upstream 254589 23396501 ~ 23400922 (+)
G22800 NA non-coding downstream 6560 23667905 ~ 23672990 (+)
G22795 ddx5,LOC107695114,LOC108432077,LOC107583258,LOC107723600,LOC107602339,LOC103024726,LOC103143670,LOC106937022 non-coding downstream 10049 23671394 ~ 23749009 (+)
G22802 NA non-coding downstream 93177 23754522 ~ 23755997 (+)
G22816 smurf2,LOC106937021,LOC107104615,LOC106934056 non-coding downstream 97398 23758743 ~ 23759342 (+)
G22833 NA non-coding downstream 140831 23802176 ~ 23805489 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other upstream 223745 23424621 ~ 23431766 (+)
LOC122341907 NA other upstream 246697 23403441 ~ 23408814 (+)
LOC122341898 LOC107662363 other upstream 293569 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 311871 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 491795 23158219 ~ 23163716 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other downstream 48158 23709503 ~ 23721719 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 378557 24039902 ~ 24051913 (+)
G22958 NA other downstream 433679 24095024 ~ 24097159 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 772710 24434055 ~ 24439463 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other downstream 785533 24446878 ~ 24449289 (+)

Expression


Co-expression Network