LOC122333376


Basic Information

Item Value
gene id LOC122333376
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2293303 ~ 2296045 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230952.1
GTgcatgtgatatatatatatatatatatgccacaCATGCACAGAATGAGTAAAAACTGGTCTCTAGATCGCAGCATACTTTGCTTGTGTTAGTCAACGaagagtaaaaatgttaaaattaactgTTATCTAATGTGTTTTTGCTCCATATTAATATTTAGGGGGAGATCTGTTAGTGTTTAATGTTGcgttatttttgaaatgtgaaaaagttgtgtaattattattgtgCAGAAGAGTAGAGCCTGTGAGGACGATGACTGGccaaatgatacatttttatatttattgttgtattatttaaaacgtCATGGCCGTGCACTTTTCAGCACAATGAGCGTCTGTTCTCTATACTGTGACGTTATTGTCATCATCGCCCCGCCCTTCACcgggctcccgacgggagtgggtgtgtccgagaggaggggcgcctggtgaagggcggggcgatgatgacaataaaggggaggggcagccgactcgtcacaatactCTTTCGTAACATAAACAAGAAACTGATCTGCTTTCTTACAAACAGGAAGTGTCTCAGGAAGCgtcgcaaaactgaagttgatctactgatgtcacatgggctgttttaccaatgtatttacTGTGTTTCTGGACCCGGATCATTTCAGTTGGTCAGATACCTCtctgatttgatcaaaaatgtctttcagatggtgaattttcattttggggcgaATTAACCCTTTAAGGACAATAAATCAAGTCATGTATCATGTACGTGCGGCATAAATAGGCGTTACTGTTACAAACCCctgtttaaatgattaaattaaattcgcAAACGGAGGTGAACAGAACATCAAAGAAACGCAGATccgaaagaaaaaagaaaaggttccAAAAAGAACTTGTAGGAAAAAAGGGGAGATAAAACTCCAgcgtaagaaaaaaaaccaaaatattaataaacctaaatcaaaagaaaagaaaaataaaacttgttaGATACAGGGAGAACCTGCAAACTCCACAGAAAGGCCTCCTGTATCAGTCTGGGCTTGAACCGGGGATCTTCTGGCTGCTGTATAAACCGCTTAAGGGAAGTGACACGAGAGACGCTCCAGTGACCAAGGCGTTAATAAAAACAGGGCGCTTATAATTTGCTGGGTGTTTCCACTACGTGAACGACAAGaATACACTTGGTCAAGTGTGAAGACAAACACCAGACTAAGACTGCTTTATTTCTGGTACAATTAGCTTAAATCTCTGCTACGCCAAGGAGATGAATCTCGAGGTACTGGAAGAAAACCCACCTGATGTCACTTTAGATCACATAGCTAAGGACttggtgtctttttttaatgggtTTAAACGCTTCAATGAGGTTAGAAGACGGCTTGAAAAGAAATGCACCATTAAAACGGAGCGTGAACATAAATGCTGGTCAGAAGATAACATCAAACAAGCTTGGcgagaaacaataaaaaagcgTAAAAAGTCAGACAAAAGAAGACAACGGGCCGGTGTGATAATATTGCAGATCGTAGAAAGTTTTGTTTGTGATATGTGTAAACAAAATAGAGCACAGAAGAAGCTTCACGCTACAAGCGATCAACAAGTCTGTGAAATGAGAAGACACTCGGAAGACAGAATAAGTGAAAGCGAAGCTGAACTAGAGCGAGCGGGAGCCGCTGGAGGAGATGAGCAGAGAAGAAAACAGGTGTGTGAAGCATCTAAACGTTCAGACCATTCTGCTCCTGCGTCAAGAAGTCAACTTTCAGCTTCTAGAACAGATGAAGCGAATCCGAGCAAAAGTGAAACCAAGAAGGCACTTAAGAATCAGGTCACTTTAGCTAAAAACTGTGAGCAGCAGAAAAGTATCGACTTGCATAATGTGCATGATAAAGAGAGCGAAAGGTCGAAAAATGGTCTTCGGTCAACTGTTAGAAAAGAATTTGTCAAAGCACGTATAACCGATGTAGAAGACGGATCGCCTCAAGGAGCTGCTGAAGGAGTTAAGCGGAAAAAAATCAGTAATCAAGGGCAAACAAGTAGCAATCAGAGCCAAACTGGGACGCCATTTCAGGCCAAGAAAAAGTCCTCTGGGAATGATTCTGGTGATTCCTGTGACCAGTCCGAAGAAAAGAGACGTAAAGAAGGCATCCCCTACATACGTATCCCTCTAACAAATATTATCAAGCCAACCTCTAAatccaaaacacaaacaatgaaGTCtgattatgaattaataaatggacTCCCTGAGAAAAGTGAAAATACAGATGATCCTGATGATTATACAATTGTGCAAAAAGAATTTTATGTCATGTTATTcaacaaagagaaaaatcatGCTGAATGGGTGTATGAAATACTGAACAAGCAAACTTTACTTCGGTTTCCTAGATTTCGATATAGATATAAAGATGACCAAAAGGATCCAGACtatgaagaagaaaagaatCAATGGGGCCAAAAAATGAGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230952.1 True 2461 mRNA 0.40 3 2293303 2296045

Neighbor

gene id symbol gene type direction distance location
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding upstream 22839 2267588 ~ 2270464 (+)
LOC122341668 LOC107755616,LOC107672923 coding upstream 25795 2261610 ~ 2267508 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding upstream 152482 2131218 ~ 2140821 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding upstream 282872 2002679 ~ 2010431 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 351510 1925747 ~ 1941793 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding downstream 27655 2323700 ~ 2340093 (+)
LOC122341598 NA coding downstream 45486 2341531 ~ 2349689 (+)
LOC122341572 LOC107751626,LOC107565147,LOC107696345 coding downstream 53730 2349775 ~ 2691512 (+)
LOC122341566 LOC107741349,LOC107677340,LOC107696333,LOC107575050,LOC107567211 coding downstream 61641 2357686 ~ 2370636 (+)
junbb junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 coding downstream 126026 2422071 ~ 2423550 (+)
LOC122341670 NA non-coding upstream 38648 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 48371 2243357 ~ 2244932 (+)
G16246 NA non-coding upstream 50168 2192086 ~ 2243135 (+)
G16218 ddx39ab,LOC107563749,LOC107755611,LOC107672936,LOC107708265,LOC107691101,LOC107563747 non-coding upstream 142818 2143869 ~ 2150485 (+)
G16241 NA non-coding upstream 149497 2142227 ~ 2143806 (+)
G16310 NA non-coding downstream 822 2296867 ~ 2356071 (+)
G16227 NA non-coding downstream 18255 2314300 ~ 2374078 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding downstream 130363 2426408 ~ 2434512 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 220467 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 268443 2564488 ~ 2565843 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 127610 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 178964 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 427518 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 428074 1619312 ~ 1865229 (+)
G16347 NA other downstream 272039 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 345101 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 986945 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 1024775 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1214031 3510076 ~ 3526914 (+)

Expression


Co-expression Network