cacng1b (cacng1b,cacng1,LOC107666105,LOC107724731,LOC107691235,LOC108412846)


Basic Information

Item Value
gene id cacng1b
gene name cacng1b,cacng1,LOC107666105,LOC107724731,LOC107691235,LOC108412846
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26596279 ~ 26606578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231005.1
agagtgaaaactAGGGCACTATTATCTGGCCTCTTTTTCCAAGCAGAAGCAGAGATTTGTGGACAGTGAGCTGGAGTGAAGAGATAGCGGCTTGCCGTGTGACTTTTACATTTCCCTTAGTGCCTCAGAAGTAAACTAAAACAAGGTGTCCATTCAAGGGCAGAGACGCTTTCAAACTCATCTTCGGAGGCCACCATGCTGGAGGACAAGAAGACCAAGGTGAAGATCACCTTTCTGGTTATCCTGGTTGGCATCTCGTCCATGTTGGCGGCGGTGGTGACGGACCACTGGGCGGTGCTGAGTCCCAGGGTGGAGCGGCTCAACACCACCTGCGAAGCGGCCCACTTCGGACTCTGGAGGCTGTGTAAAAAGAGTATCTTCATTGTGGAGGAAGACCCTCAGGGTAAAGGCTGTGGCCCTATCAGCCTGCCAGGAGTCAAGAACTGCTCCTACTTCAAACACTTCACATCAGGGGAAGAGGCTGAAGTTTTTGAAGTGAAGACTCAGAAAGAGTACAACATCTCAGCTGCTGCCATCGCCATCTTCAGTTTGGCCTTCATGACCCTGGGCAGTCTCTGCCTCCTGGGGGCTTTTGGGAAGGGCAGAGACTACCTGTTGAGACCAGCTGGCATGTTCTTCGCTTTCGCAGGCCTGTGCACCGTCATCTCGGTGGAGATCATGAGGCAGTCGGTCAAGCGCATGATCGACAGCGACGAGACCATATGGATCGAGTACTACTATTCGTGGTCCTTCGCTTGCGCCTGCGCCGCCTtcaccctcctcttcctcagcgGCATCAGCCTCCTCATCATCTCCATGCCACACATGCCTAGAAACCCCTGGGAGACCTGCATGGACGCCGAGCCGGAGCCCATAGACTAGCGTGAGAGTAAGAGCGAAGCCTGTAGCCGAGCGAACGGTAATGATGCATTGCGTTTGTAGACGATGATAGTGATGCATTGATCTTTTTAACTAAGCACCGACAGAGACGTCGAATCGCTAAAAGGGTAGGTTATccaaaactagtttttttttctatttgtaccGTAGATCAATTGGAAGAAAGTCAGTCAAACAGGTTTAGAGTAAACGAGCGCATTCCCATTACGAAATATCTAACACTGATTTTGTATGGTATGTGAAACTTTTTATGTGCATTCATGCTTATATGCAATAGACGACAGCGTAGAATGTATATTTAGGGAGTTTACAATCTGTTATTTCTGAAACGGCGACCGTGAAACTATAAACTGTTGCTGTTATACGACTAGTTTCAGCAAATACAGATTCAATTTTAAAGTGAGGTGAATGTAATAACGTTACTAGTACAGGTTTATACTTATCAGGTAGTTTAAGCGGTTATAATCTTTACACACATGACTTGGACTTCCTTTTAGCGACTGAATCTCAGAGGTCCGCCTCGAGAAAGACTGTTAAAACCGTTTTGGTGTTCCTAATGCACTTCCTGTTGCTGTTTCGAGACTGTCGTTTAATTTAAAGAGAAGGGCATTTTTGTTCTCAACCGACTGTACGATCGAACCATTTTCACAAAAGGATTTAATAACCTGCATACAAAATGAGTCTACTTGAGTTCATCGACTGAAATCCACAGTCGCACGTATATTCGTAAACGGAGCACATTCAACGAGCTTATTCTGTTACTCGCACAGCTTTGTTATCCCGCGGCGCGCGCTTTTTTGGGCTTGTAGAAACACAGCAAACCAGGGTTTAACATTGCGCAGTGCCATCTGATATATTGATGGTTCactcaaaatttaaaaaaatatatatattccaaacCCGTACGTTTTTCGTTCATCTTTGGGAACacaattttagatatttttggtgaaatctgAGAGTTTTCTGACTCTccgtagacagcaacacaaatgACACGCTCAAGGCCCAGACGTCATTAAAATAGCCGTAGAGTGGTGCAACCGTGATGTTACGTAGCTACGAGAACACTTGGGTTCAAcgcaaacacaaatacatttatgcagCGATTTCTTCTTTTATGCGAGTAAATGAGAGTACCAGGATATAGGCGTCATTATTTTTGCCGCctaaaagtattctcatagctttacattacggttgaaccactgacgtCACTTGGACTATTTAAACGATGTCCTTAATATCTTTTTGGGCCTTGAACGCGTCTATGAAGAAAcggaaagctctcggatttcattacaaattatttttgttatgagcgtcttacgggtttggaacaacatgagggcgagtagTAGATgacaactttcatttttgggtgatctatccctttaagacgctgaaaacagctataaatGTTTGGGAGATTAATTAAACGGTTAAAAGCAGGCATTCTTTTATagacaaaagcatttttaagaaGACTTGTTAAAAGATGGAAGCTGAAGACACAATGTTTTTCTAAACCGTGGccaaataatgaacaaaattccaatctatgaataaaaaaatatatattttctgtatatttgttAAGTTCAgcagtacaaatatatatttgctttattgcTAATGgcaatagtttttgtttttggttgcaCTACTAACCATTTCCTAAACataagttaatatattatagCTCTAATAacgcttgattttttttaatatcccGATCAGGCGATCACAAACAAACCTCtttgttgcttattaaaatgacaaatgtccTGATTGATAATAAAAAGGTTTGATTTTCA

Function

symbol description
cacng1b Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in malignant hyperthermia. Orthologous to human CACNG1 (calcium voltage-gated channel auxiliary subunit gamma 1).
cacng1 Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport and sarcoplasmic reticulum calcium ion transport. Predicted to be located in T-tubule. Predicted to be integral component of plasma membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Implicated in malignant hyperthermia.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-1 subunit-like

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231005.1 True 2717 mRNA 0.42 4 26596279 26606578

Neighbor

gene id symbol gene type direction distance location
cacng4b cacng4b,LOC107691234,LOC107565862,LOC107713946,LOC107548710,LOC107724746,LOC107665825,LOC108412836 coding upstream 6115 26578230 ~ 26590164 (+)
aimp2 aimp2,LOC107724742,LOC107691232,LOC107665836,LOC107713960,LOC107565874 coding upstream 23535 26568135 ~ 26572744 (+)
pvalb8 pvalb8,LOC107724728,LOC107666119,LOC107548708,LOC107691229,LOC107666113,LOC103469263 coding upstream 36733 26554901 ~ 26559546 (+)
pvalb4 pvalb4,LOC100305042,LOC107724737,LOC107665849,LOC107548706,LOC107565875 coding upstream 42022 26552880 ~ 26554257 (+)
pvalb1 pvalb1,LOC107713958,LOC107565876,LOC108279005,LOC107691228,LOC108412819,LOC107665844 coding upstream 44823 26547774 ~ 26551456 (+)
dxo LOC107666098,LOC107743041,LOC107752708,LOC107691245 coding downstream 100222 26706800 ~ 26710818 (+)
anks4b anks4b,LOC107743043,LOC107666092,LOC107691246,LOC107752709,LOC107565866,LOC107548682 coding downstream 111676 26718254 ~ 26722466 (+)
jmjd6 jmjd6,LOC107748872,LOC107665784,LOC107654591,LOC107565873 coding downstream 198074 26804652 ~ 26812016 (+)
si:ch73-366l1.5 mxra7 coding downstream 206399 26812977 ~ 26835760 (+)
st6galnac2 st6galnac2 coding downstream 243398 26849976 ~ 26856930 (+)
G23552 NA non-coding upstream 98312 26492946 ~ 26497967 (+)
G23550 LOC107691223,LOC107724726,LOC107713954,LOC107548703,LOC107665916 non-coding upstream 160431 26428219 ~ 26435848 (+)
G23508 NA non-coding upstream 404437 26179232 ~ 26191842 (+)
G23189 NA non-coding upstream 462449 26131602 ~ 26133830 (+)
G23176 NA non-coding upstream 523590 26059352 ~ 26072689 (+)
G23594 helz,LOC107665819,LOC107691233,LOC107565856 non-coding downstream 38693 26645271 ~ 26646452 (+)
G23659 NA non-coding downstream 116234 26722812 ~ 26723027 (+)
G23664 LOC107548683,LOC107666079,LOC107654573,LOC107752704,LOC107743002 non-coding downstream 122230 26728808 ~ 26729365 (+)
G23692 NA non-coding downstream 218530 26825108 ~ 26834795 (+)
LOC122341893 NA non-coding downstream 223308 26829886 ~ 26834669 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 643532 25948054 ~ 25952747 (+)
LOC122341383 tom1l2 other upstream 684654 25894590 ~ 25911625 (+)
G23146 NA other upstream 745703 25837143 ~ 25850576 (+)
LOC122341783 arl16,LOC107583744 other upstream 762081 25832505 ~ 25834198 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 933962 25661048 ~ 25662317 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 44251 26650829 ~ 26705731 (+)
ubald2 ubald2,LOC107548684 other downstream 152485 26759063 ~ 26772903 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other downstream 191853 26798431 ~ 26801401 (+)
G23695 NA other downstream 240145 26846723 ~ 26847357 (+)
LOC122335546 NA other downstream 675249 27281827 ~ 27282406 (+)

Expression


Co-expression Network