dnase1 (dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635)


Basic Information

Item Value
gene id dnase1
gene name dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18032712 ~ 18035362 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231724.1
ATACCACTTTTATTCCCTGAGAGAGCGCCTTGCTATAGAGTATACAAAGACTTAGTTGTGCGAAAAAGCTTTCTCCCTGTTCTCACAGCATAAGCGAAAGCAGAGCTCAGAAGCAGGTACATTTCAGCATGAAGATTATTACTACTATAGGTCTCCTCCTGGTATCTGTCCACCTTGGACACTCTTTTTTGATTGGAGCCTTCAACATCAAATCCTTTGGGGATTCAAAAGCATCTAATGCCACCCTTCTTGACATCATTACCAAAGTGGTACACCGCTATGACATTGTACTCATCCAAGAAGTGAGAGACAGTGATCTCACTGCAACGAATAAACTGATGCAAAGTGTGAATGGAGGTTCCTCTCCATACGAATATCAGCACATTGTAAGTGAGCCCTTGGGTAGGAACACTTATAAAGAGAGATATCTCTTTATTTACAGACGTCAGACGGTGTCCGTTGCAAAAAGCTTCCAGTATGATGATGGATGTGAATCCTGTGGGACTGATACTTTCAACAGAGAACCCTTTGTTGTGATGTTCTCCTGTAATACAGCGGTCCGGGAATTTGCCCTCATTCCTCAGCATACATCCCCAGAGGTCGCTGTGAAGGAAATTGATGCTCTGCATGATGTCGTCTTGGATACTAGACAACGTCTGAACACAAATAACATCATGCTTTTGGGAGACTTCAATGCTGGCTGTAGCTATGTTTCAAATTCAGACTGGTCCAAAATACGCCTCCGCACCGACCAAAGTTACACCTGGCTCATCCCTGATAGTGCAGACACGACCGTCACAAACACAAACTGCCCTTATGACAGGATTGTGGCCACCTCCGACATGATGGAAGGAGTGTCTGCTGGATCAGCGCAGATCTTTGACTTCATGCAAGCCCATGGACTAAGCCAGAGTTGGGCCCTGGCAGTGAGCGATCACTTTCCAGTTGAGGTCAAGCTCCTGTGAAAAACATCAAGGTTGTTCCTTCTCAGCAGACATACACTGCAATGCTAATGCTTAACGTGTAGTGCTGtcttaaaattaaagatgaTAATGGTAATATCAA
>XM_043231733.1
TTTATTCCCTGAGAGAGCGCCTTGCTATAGAGTATACAAAGACTTAGTTGTGCGAAAAAGCTTTCTCCCTGTTCTCACAGCATAAGCGAAAGCAGAGCTCAGAAGCAGCATGAAGATTATTACTACTATAGGTCTCCTCCTGGTATCTGTCCACCTTGGACACTCTTTTTTGATTGGAGCCTTCAACATCAAATCCTTTGGGGATTCAAAAGCATCTAATGCCACCCTTCTTGACATCATTACCAAAGTGGTACACCGCTATGACATTGTACTCATCCAAGAAGTGAGAGACAGTGATCTCACTGCAACGAATAAACTGATGCAAAGTGTGAATGGAGGTTCCTCTCCATACGAATATCAGCACATTGTAAGTGAGCCCTTGGGTAGGAACACTTATAAAGAGAGATATCTCTTTATTTACAGACGTCAGACGGTGTCCGTTGCAAAAAGCTTCCAGTATGATGATGGATGTGAATCCTGTGGGACTGATACTTTCAACAGAGAACCCTTTGTTGTGATGTTCTCCTGTAATACAGCGGTCCGGGAATTTGCCCTCATTCCTCAGCATACATCCCCAGAGGTCGCTGTGAAGGAAATTGATGCTCTGCATGATGTCGTCTTGGATACTAGACAACGTCTGAACACAAATAACATCATGCTTTTGGGAGACTTCAATGCTGGCTGTAGCTATGTTTCAAATTCAGACTGGTCCAAAATACGCCTCCGCACCGACCAAAGTTACACCTGGCTCATCCCTGATAGTGCAGACACGACCGTCACAAACACAAACTGCCCTTATGACAGGATTGTGGCCACCTCCGACATGATGGAAGGAGTGTCTGCTGGATCAGCGCAGATCTTTGACTTCATGCAAGCCCATGGACTAAGCCAGAGTTGGGCCCTGGCAGTGAGCGATCACTTTCCAGTTGAGGTCAAGCTCCTGTGAAAAACATCAAGGTTGTTCCTTCTCAGCAGACATACACTGCAATGCTAATGCTTAACGTGTAGTGCTGtcttaaaattaaagatgaTAATGGTAATATCAA

Function

symbol description
dnase1 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process, endonucleolytic. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to several human genes including DNASE1 (deoxyribonuclease 1).

NR:

description
PREDICTED: deoxyribonuclease-1

GO:

id name namespace
GO:0000737 DNA catabolic process, endonucleolytic biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG:

id description
K11994 DNASE1; deoxyribonuclease-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231724.1 True 1065 mRNA 0.45 9 18032712 18035362
XM_043231733.1 False 1046 mRNA 0.45 9 18032720 18035362

Neighbor

gene id symbol gene type direction distance location
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding upstream 6580 17980222 ~ 18026132 (+)
raver1 raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048 coding upstream 62038 17954849 ~ 17970674 (+)
tyk2 tyk2,LOC107703360,LOC107587917,LOC107674650,LOC107596804 coding upstream 78380 17931705 ~ 17954332 (+)
unkl unkl,LOC107550311,LOC107674636,LOC107565763,LOC107710649,LOC107703366,LOC106601098 coding upstream 317090 17691906 ~ 17715622 (+)
gper1 LOC107703333,LOC107710646,LOC107579847,LOC107719188,LOC107565760,LOC107674622 coding upstream 347017 17679275 ~ 17685695 (+)
c3h16orf72 zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273 coding downstream 89632 18124994 ~ 18129811 (+)
atf7ip2 LOC107690257,LOC107733857 coding downstream 337395 18372757 ~ 18378482 (+)
ciita LOC107567931,LOC107733851,LOC107690261 coding downstream 390998 18426360 ~ 18437883 (+)
clec16a clec16a,LOC107690263,LOC107590577,LOC107567904 coding downstream 408009 18443371 ~ 18487548 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576,LOC107685906 coding downstream 460232 18495594 ~ 18504038 (+)
G20994 NA non-coding upstream 169631 17862067 ~ 17863081 (+)
G20951 h3f3b,H3F3A,LOC105909691,LOC101073377,LOC107388308,LOC102790198,LOC107572204,LOC106578873 non-coding upstream 342424 17689415 ~ 17690288 (+)
G20953 NA non-coding upstream 381411 17650767 ~ 17651301 (+)
G20927 NA non-coding upstream 460239 17572130 ~ 17572473 (+)
G20915 LOC107550314,LOC107703374,LOC107719177,LOC107565769,LOC107741796 non-coding upstream 469348 17553374 ~ 17563364 (+)
G21049 NA non-coding downstream 177 18035539 ~ 18042621 (+)
G21050 NA non-coding downstream 3199 18038561 ~ 18041682 (+)
G21073 NA non-coding downstream 81176 18116538 ~ 18119426 (+)
G21076 NA non-coding downstream 122809 18158171 ~ 18158546 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding downstream 539325 18574687 ~ 18744585 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 103078 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 126069 17904584 ~ 17906643 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other upstream 131221 17870177 ~ 17901491 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other upstream 309289 17719182 ~ 17723423 (+)
LOC122341316 NA other upstream 832082 17137930 ~ 17200630 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other downstream 38713 18074075 ~ 18075616 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other downstream 62283 18097645 ~ 18101933 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other downstream 370604 18405966 ~ 18425076 (+)
G21124 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693 other downstream 408028 18443390 ~ 18843419 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 646992 18682354 ~ 18687853 (+)

Expression


Co-expression Network