LOC122334005 (LOC107680844,LOC107561345,LOC107732849)


Basic Information

Item Value
gene id LOC122334005
gene name LOC107680844,LOC107561345,LOC107732849
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10679014 ~ 10687531 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231876.1
ATTCCAAAGGTCATCTTCCCAGTTTCTCCACATTGCAGGTGGAAAGAAGTGAAACGGCATAATGGAAACACTTAACAACTATCTAAGTAAATATAAGGgctttgtttttgcaaaagGTGAAACCACTGCGGAGTACATCGACTCTCTTCAGCATTTTGAGATTCGTGACAGTGATGTTTTTCTGGTGACATATCCCAAATCAGGCACAATATGGACACAGaacataataaatttaatttgtgaGGATGCCACAGACAAAACTCAATTTCCCAACAATCCTGAGAAGATGCCTTGGTTAGAGTACCCTAAAGGCCGAGCGGACTACTCTTTGCGATCGTCTCCACGGTTCTTTACCACCCATCTCACACCCAGACTGATGCCACCAGGCCTTAGGGGGAAGAAAGGAAAGaTCGTGTATGTGGTCAGAAATCCAAAAGACAATGCCGTGTCATATTATCACTTCAGCAAAGTCTGGGCCAAGCTTGAGAAATACAAGAGCTTTGAAAACTTTCTGGAGCAGTATCTGACAGGAAATgTTGGCGGTTCATCTTGGTTTGATCATATCCAAGAGTGGCACAGTGAAGGAGACCAGTACAACATACTTTTCCTGTCATATGAGGATATGGTCATGGATCTCAGGACAGCAGTGGAGAAAGTCTGCAAGTTCTTGGGGAAAAATCTGGATGACGTTGCTATCACACATGTTGTGGAAAAGgcaactttcaaaaacatgaagaaGGACCCAAAGGCTAACTATGAATTTATTCCTAGAGATCTACTGCTGAAGCCCCAATTCATGCGCAAAGGCACAATAGGAGATTGGAAGAACACATTCACTGTagcacaaaatgaaatgtttgacCAGATCTtcaaagaaagaatgaaagatttTCCTCTGAACTTCATCTGGGACCTGGACAACTAAAAACATTCATGAGACAAAAGAACCAGCATTTCTTGCCCCTGGACATTAAAcaccgtttttgtttttttttaaacagtgttcTCCCACAACCCCCGTAATAATGTGACCACTGTGTGTACTTTATAATCTCCTATATAAGCCTTAAAATCCTGGcattatgacatttaaaaaagaagaaaaaaaaacatacaaaacttTAAATTGGTTTTTACATTGCCTAAAAGTTTAGTCTTGAAGAAATCGGATTCATGTTTAAAGTCATATTTGAACCTGAATGAACCATAAGTTGTTGCTGTCCTTTTCAGAATGGTGACATGATGCCAActgaaacagaatttttttttttaatttttgcaatgacgatattttgtgtgttaatGCTCGGAACTGAAACCAATTATTTGCACGCAGGTTTTTAGGATCACCCTCCTGTCATCTCTCACTCACAGCAAACTAACGGTTGGAGGACATGATTAAGCAAATTCATCAAGACATCAAGTTGACATCATCAGAAAAGGAGTGTAATTCTACAGCAGAAACAAATTATCagattttgattaaagattacCACAACAAACTTTTAACTTGAACAGATTAATTGTTCACTTTAAGACTAACAATATgcactaacaaaataaatatgatacatattgattttatatagatatgtgaccctggaacacCAGTCTTTGATTTGGTCAAgtgagatttatacattataaaaaaaaagaataagctTAATATTATGTATAGTTTGCTAGGATAAGGCAATATTtagctgagatacaactatttaaaaaagtggGATATGAAGgtgcaaaacaataaaatcaattgAGAatttca

Function

NR:

description
PREDICTED: amine sulfotransferase-like isoform X2

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231876.1 True 1771 mRNA 0.37 6 10679014 10687531

Neighbor

gene id symbol gene type direction distance location
cyth4a cyth4a,LOC107551152,LOC107690334,LOC107733836,LOC107561350,LOC107680872 coding downstream 53523 10618431 ~ 10625491 (-)
c3h16orf89 si:ch211-76l23.7,LOC107738634,LOC107568163,LOC107733838,LOC107690316 coding downstream 289941 10385450 ~ 10389073 (-)
si:ch211-76l23.4 si:ch211-76l23.4 coding downstream 306811 10370056 ~ 10372203 (-)
gsg1l gsg1l,LOC107690243,LOC107738642,LOC107685933,LOC107568433,LOC103031039,LOC108436662 coding downstream 332707 10332223 ~ 10346307 (-)
fbxl16 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107733860,LOC107568127,LOC107690242 coding downstream 363288 10297430 ~ 10315726 (-)
LOC122334013 LOC107680844,LOC107561345,LOC107732849 coding upstream 1888 10689419 ~ 10693664 (-)
apol si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107732904,LOC107680847,LOC107551140 coding upstream 11462 10698993 ~ 10702733 (-)
rpl3 LOC107680866,LOC103374755,LOC107687640 coding upstream 91379 10778910 ~ 10782591 (-)
LOC122342195 NA coding upstream 91570 10779101 ~ 10779235 (-)
LOC122342196 NA coding upstream 92571 10780102 ~ 10780196 (-)
G18771 NA non-coding downstream 434 10677457 ~ 10678580 (-)
G18745 NA non-coding downstream 99874 10574167 ~ 10579140 (-)
G18717 NA non-coding downstream 276803 10401833 ~ 10402211 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding downstream 770397 9901531 ~ 9908617 (-)
G18634 LOC107596828,LOC107588005,LOC107596825,LOC107703325,LOC107587921,LOC108440249,LOC108440213 non-coding downstream 885829 9789616 ~ 9793185 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding upstream 1633 10689164 ~ 10697539 (-)
LOC122334019 NA non-coding upstream 1888 10689419 ~ 10695504 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding upstream 79769 10767300 ~ 10769398 (-)
G19108 NA non-coding upstream 646225 11333756 ~ 11335800 (-)
G19117 NA non-coding upstream 722804 11410335 ~ 11410716 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 282673 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 468398 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 1216109 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 1540925 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 1671571 8992714 ~ 9007443 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 324405 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 724454 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1006741 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 1025289 11712820 ~ 11728001 (-)
G19383 NA other upstream 1166217 11853748 ~ 11880959 (-)

Expression


Co-expression Network